View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20398_high_35 (Length: 256)

Name: NF20398_high_35
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20398_high_35
NF20398_high_35
[»] chr2 (3 HSPs)
chr2 (10-141)||(41444162-41444295)
chr2 (142-190)||(35214584-35214632)
chr2 (142-190)||(3148193-3148241)
[»] scaffold0425 (2 HSPs)
scaffold0425 (142-239)||(3826-3923)
scaffold0425 (153-198)||(4527-4572)
[»] chr7 (3 HSPs)
chr7 (143-239)||(325329-325425)
chr7 (176-235)||(34852591-34852650)
chr7 (142-198)||(325641-325697)
[»] chr4 (2 HSPs)
chr4 (184-239)||(31912267-31912322)
chr4 (142-190)||(50656957-50657005)
[»] chr3 (1 HSPs)
chr3 (142-190)||(42423227-42423275)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 41444295 - 41444162
Alignment:
Q  10 ataattctaccaaaacaaaggcagtgaggcagtgtgttgggtatggctcataggttctgttaggaattgttgttcaacac--tgttttttagtaaatgct 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  41444295 ataattctaccaaaacaaaggaagtgaggcagtgtgttgggtatggctcataggttctgttaggaattgttgttcaacacaatgttttttagtaaatgct 41444196  T
Q  108 tcaattcgatttatcaactacaggttataatatc 141  Q
    ||||||||||||||||||||||||||||||||||    
T  41444195 tcaattcgatttatcaactacaggttataatatc 41444162  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 35214584 - 35214632
Alignment:
Q  142 ggtggcattttacatgggacacttgaaaatcttcccaccatgggaaagt 190  Q
    |||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  35214584 ggtgacatttaacatgagacacttgaaaatcttcccaccatgggaaagt 35214632  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 3148193 - 3148241
Alignment:
Q  142 ggtggcattttacatgggacacttgaaaatcttcccaccatgggaaagt 190  Q
    |||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  3148193 ggtggcatttaacacgggacacttgaaaatcttcccatcatggaaaagt 3148241  T

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Target: scaffold0425 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 3826 - 3923
Alignment:
Q  142 ggtggcattttacatgggacacttgaaaatcttcccaccatgggaaagtcacatttttaaccattgatatatttatataatattgagtggttaagatg 239  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3826 ggtggcatttcacatgggacacttgaaaatcttcccaccatgggaaagtcacatttttaaccattgatatatttatataatattgagtggttaagatg 3923  T

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Target: scaffold0425; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 4572 - 4527
Alignment:
Q  153 acatgggacacttgaaaatcttcccaccatgggaaagtcacatttt 198  Q
    |||| |||||||||| ||||||||||||||| ||||||||| ||||    
T  4572 acataggacacttgataatcttcccaccatgagaaagtcacttttt 4527  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 325329 - 325425
Alignment:
Q  143 gtggcattttacatgggacacttgaaaatcttcccaccatgggaaagtcacatttttaaccattgatatatttatataatattgagtggttaagatg 239  Q
    ||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  325329 gtggcatttaacatgggacacttgaaaatcttcccaccatagaaaagtcacatttttaaccattgatatatttatataatattgagtggttaagatg 325425  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 34852591 - 34852650
Alignment:
Q  176 ccaccatgggaaagtcacatttttaaccattgatatatttatataatattgagtggttaa 235  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  34852591 ccaccatgggaaagttacatttttagccattgatatattcatataatattgagtggttaa 34852650  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 325697 - 325641
Alignment:
Q  142 ggtggcattttacatgggacacttgaaaatcttcccaccatgggaaagtcacatttt 198  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  325697 ggtggcatttaacatgggacatttgaaaaccttcccaccatgggaaaatcacttttt 325641  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 31912322 - 31912267
Alignment:
Q  184 ggaaagtcacatttttaaccattgatatatttatataatattgagtggttaagatg 239  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  31912322 ggaaagttacatttttagccattgatatattcatataatattgagtggttaagatg 31912267  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 50656957 - 50657005
Alignment:
Q  142 ggtggcattttacatgggacacttgaaaatcttcccaccatgggaaagt 190  Q
    ||||| |||| ||||| |||||||||||||||||||||||||| |||||    
T  50656957 ggtggtatttcacatgagacacttgaaaatcttcccaccatggaaaagt 50657005  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 42423275 - 42423227
Alignment:
Q  142 ggtggcattttacatgggacacttgaaaatcttcccaccatgggaaagt 190  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  42423275 ggtggcatttcacatgagacacttgaaaatcttcccaccatgggaaagt 42423227  T

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