View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_high_37 (Length: 249)
Name: NF20398_high_37
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 8122755 - 8122536
Alignment:
| Q |
12 |
caaaggataaaagatcgaaagatatgagtgtgagcataagtgacaggtctaacatcttggtatgaannnnnnnnnaaacacatccttatcaagatatgta |
111 |
Q |
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| T |
8122755 |
caaaggataaaagatcgaaagatatgagtgtgagtataagtgacaggtctaacatcttggtatgaattttttttttaacacatccttatcaagatatgta |
8122656 |
T |
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| Q |
112 |
aacctcaattaaaatagtcgttcaggattgtaattttgatgatcaatttacctcttaactctacccagaactcatacaacatacatatcattcatcgaca |
211 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
8122655 |
aacctcaattaaaatagtcgttcaagattgtaattttgatgatcaatttacctcttaactctacctagaactcatacaacatacatatcatccatcgaca |
8122556 |
T |
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| Q |
212 |
aatatgtgatataagttggt |
231 |
Q |
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|||||||||||| ||||||| |
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| T |
8122555 |
aatatgtgatatgagttggt |
8122536 |
T |
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