View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_high_4 (Length: 553)
Name: NF20398_high_4
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 541
Target Start/End: Complemental strand, 41509479 - 41508940
Alignment:
| Q |
16 |
gaatcatattaggaaagtagtgatggtatgcaatactgcaatacatggatatat-cat-----ataggtctagaatcatgtgaataacacgtagcatgct |
109 |
Q |
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| T |
41509479 |
gaatcatgttaggaaagtagtgatggtatgcaatactacaatgcatggatatatgcatggagtataggtctagaatcatgtgaatcacacgtagcatgct |
41509380 |
T |
|
| Q |
110 |
tttaatgatgaccacaaattctcttctaagacgcaaacaaaaaagtgagaaggaagtgacgtgaagattcaattatagtatggcaggagagtcagaatgg |
209 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
41509379 |
ttttatgatgaccacaaattctcttctaagacgcaaacaaaaaagtgagaaggaagtgacgtgaagattcaattatagtatggcaggagtcagaaaatgg |
41509280 |
T |
|
| Q |
210 |
aaacgactcatgcccacttgtttacctgaataaattcttgcatgaccacttccaccacatgtgtcttatgtacggtattaattaaaccgtgttaacttaa |
309 |
Q |
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| T |
41509279 |
aaacgactcatgcccacttgtttacctgaataaattcttgcatgaccacatccaccacatgtgtcttatgtacggt----attaaaccgtgttaacttaa |
41509184 |
T |
|
| Q |
310 |
catattcaaagtcagtgtatttgtcttagatcttttaggtaatgttttagattagagtttttgccaactgaaaaaatgggtttgcgagagaatattccac |
409 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
41509183 |
catattcaaaatcagtgtatttgtcttagatcttttaggtaatgttttagattagagtttttgccaactgaaaaagtgggtttgcgaaagaatattccac |
41509084 |
T |
|
| Q |
410 |
ct----aaagaccgcggggtca-------tttttgatggaaatattagttattgataaaatagtaacattgttaatgaacaaaatatggaattaggtaac |
498 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41509083 |
ctaaagaaagaccgcggggtcaattaacttttttgatggaaatattagttattgataaaatagtaacattgttaatgaacaaaatatggagttaggtaac |
41508984 |
T |
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| Q |
499 |
atatctaaaacccctccatgttttagacttatac-tggtatatt |
541 |
Q |
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| T |
41508983 |
atatctaaaactcctccatgttttagacttatacttggtatatt |
41508940 |
T |
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