View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20398_high_7 (Length: 528)
Name: NF20398_high_7
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Complemental strand, 34192310 - 34191800
Alignment:
| Q |
1 |
aattagtggaaacaagaaccgggaatattgtgactatgatgatcttgatcttcttggatatgtaagcctaaggatttagtccacttgaaacaacatatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34192310 |
aattagtggaaacaagaaccgggaatattgtgactatgatgatcttgatcttcttggatatgtaagtctaaggatttagtccacttgaaacaacatatgt |
34192211 |
T |
|
| Q |
101 |
attggcatattcaaagcagtgttgtcaatcacgtatcgcaaaaagccatttgacaacattttcattaaattgtttatcgccaaa-aatatcattttgtag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
34192210 |
attggcatattcaaagcagtgttgtcaatcacgtattgcaaaaagccatttgacaacattttcattaaattgtttatcgccgaacaataacattttgtag |
34192111 |
T |
|
| Q |
200 |
cactattatgttactatgtctttttgataacactgattgaaaagtaaactcaaaactcactatcttaacttttgtatccttaggcatggagattgtggag |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34192110 |
cactattatgttactatatctttttgataacactgattgaaaagtaaactcaaaactcactatcttaacttttgtatccttaggcatggagattgtggag |
34192011 |
T |
|
| Q |
300 |
cgaaacaacgccgttggagctgatagaagaatcgctacgcgattccactgttggagcagaagatgaaatattgagatgtattcagatagggcttttatgt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34192010 |
cgaaacaacgccgttggagctgatagaagaatcgctacgcgattccactgttggagcagaagctgaaatattgagatgtattcagatagggcttttatgt |
34191911 |
T |
|
| Q |
400 |
gttcaagagaaagctgatgataggccagacatgtcagcagcagttctaatgctgaatggtgaaaaagcattgcctaagccaaaggaacctgccttttatc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34191910 |
gttcaagagaaagctgatgataggccagacatgtcagctgcagttctaatgctgaatggtgaaaaagcattgcctaatccaaaggaacctgccttttatc |
34191811 |
T |
|
| Q |
500 |
cgcgtcaatgc |
510 |
Q |
| |
|
||||||||||| |
|
|
| T |
34191810 |
cgcgtcaatgc |
34191800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 228 - 494
Target Start/End: Original strand, 34208442 - 34208709
Alignment:
| Q |
228 |
aacactgattgaaaagtaaactcaaaactcactatcttaacttttgtatcct-taggcatggagattgtggagcgaaacaacgccgttggagctgataga |
326 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| ||| | |||| |||||||||||| ||||| | || ||||||||||| ||||||||| |
|
|
| T |
34208442 |
aacaatgattgaaaagtaaactcaaaactcacaatcttaattttcatgtcctctaggcatggagaatgtggtgtgactcaacgccgttgatgctgataga |
34208541 |
T |
|
| Q |
327 |
agaatcgctacgcgattccactgttggagcagaagatgaaatattgagatgtattcagatagggcttttatgtgttcaagagaaagctgatgataggcca |
426 |
Q |
| |
|
||||| ||| ||||||| | || || ||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| || ||| |
|
|
| T |
34208542 |
tgaatctctaagcgattcgattgctgtagccgaacctgaaatattgagatgtattcagatagggcttttatgtgtgcaagagagacctgatgacagacca |
34208641 |
T |
|
| Q |
427 |
gacatgtcagcagcagttctaatgctgaatggtgaaaaagcattgcctaagccaaaggaacctgcctt |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34208642 |
gacatgtcagcagcagttctaatgctgaatggtgaaaaagcattgcctaagccaaaggaaccagcctt |
34208709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 222 - 500
Target Start/End: Original strand, 34219603 - 34219883
Alignment:
| Q |
222 |
tttgataacactgattgaaaagtaaactcaaaa-ctcactatcttaacttttgtatcct-taggcatggagattgtggagcgaaacaacgccgttggagc |
319 |
Q |
| |
|
||||| |||||||||||||||||||| | |||| ||||| ||||||| ||| || |||| |||||||||||| ||||| ||||| || || |||||| | |
|
|
| T |
34219603 |
tttgacaacactgattgaaaagtaaattgaaaaactcacaatcttaattttcgtgtcctctaggcatggagaatgtggtccgaaaaaatgcagttggaac |
34219702 |
T |
|
| Q |
320 |
tgatagaagaatcgctacgcgattccactgttggagcagaagatgaaatattgagatgtattcagatagggcttttatgtgttcaagagaaagctgatga |
419 |
Q |
| |
|
||||||| |||| ||| ||||||| | || || ||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||| |
|
|
| T |
34219703 |
tgatagatgaatgtctaggcgattcgattgctgtagctgaacctgaaatattgagatgtattcaaataggacttttatgtgttcaagagagatctgatga |
34219802 |
T |
|
| Q |
420 |
taggccagacatgtcagcagcagttctaatgctgaatggtgaaaaagcattgcctaagccaaaggaacctgccttttatcc |
500 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
34219803 |
taggccagacatgtcagcagtagttctaatgctgaatggtgagaaagcattgcctaatccaaaggaaccagcctattatcc |
34219883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 34219346 - 34219423
Alignment:
| Q |
1 |
aattagtggaaacaagaaccgggaatattgtgactatgatgatcttgatcttcttggatatgtaagcctaaggattta |
78 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
34219346 |
aattagtggaaacaagaacagggaatattgtgactatcatggccttgatcttcttggatatgtaagtctaaggcttta |
34219423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 34208196 - 34208311
Alignment:
| Q |
7 |
tggaaacaagaaccgggaatattgtgactatgatgatcttgatcttcttggatatgtaagcctaaggatttagtccacttgaaacaacatatgtattggc |
106 |
Q |
| |
|
|||||| |||||| |||||||| ||||| || |||||||||| ||||||||||||||||| ||| |||| |||||| | ||||||||||||| |||| |
|
|
| T |
34208196 |
tggaaaaaagaacagggaatatagtgaccatcatgatcttgaccttcttggatatgtaagtataatgattcagtcca-ataaaacaacatatgttttggt |
34208294 |
T |
|
| Q |
107 |
atattcaaagcagtgtt |
123 |
Q |
| |
|
| ||| ||| ||||||| |
|
|
| T |
34208295 |
acattgaaaacagtgtt |
34208311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University