View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_1 (Length: 669)
Name: NF20398_low_1
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 652
Target Start/End: Complemental strand, 43713679 - 43713064
Alignment:
| Q |
18 |
agattcttgaagcttttggacgtacattcttggttcttgttttgcagttatgttcttgatgcttttgtcattgcacccattctttgtaagtgatgaaggg |
117 |
Q |
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| T |
43713679 |
agattctt-aagcttttggacgtacattcttggttcttgttttgcagttatgttcttgatgcttttgtcattgcacccattctttgtaagtgatgaaggg |
43713581 |
T |
|
| Q |
118 |
gattgcatatttatttgaggcatttattggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttaggaagct |
217 |
Q |
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| T |
43713580 |
gattgcatatttatttgaggcatttattggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttaggaag-- |
43713483 |
T |
|
| Q |
218 |
gaggttcccattgatttcaaatgatgttggattcaggaaactgtggagtttagcggcataacttttctattgattagtgacaatttagaaaagccaacat |
317 |
Q |
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| T |
43713482 |
----------------tcaaatgatgttggattcaggaaactgtggagtttagcggcataacttttctattgattagtgacaatttagaaaagccaacat |
43713399 |
T |
|
| Q |
318 |
cctcgtggtactaccaaggccagtgctgatcctggacactaccgaggcctcataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaat |
417 |
Q |
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| T |
43713398 |
cctcgtggtactaccaaggccagtgctgatcctggacactaccgaggcctcataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaat |
43713299 |
T |
|
| Q |
418 |
taaacaatgatattacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcaaaaatga |
517 |
Q |
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| T |
43713298 |
taaacaatgatattacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcgaaaatga |
43713199 |
T |
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| Q |
518 |
gcatagcgaatggaggaaaatcgagagaggggagggatgaggtgtggttaggagttaaagttgaaatactgagtggctatgaggcaaaaagcattaacaa |
617 |
Q |
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| T |
43713198 |
gcatagcgaatggaggaaaatcgagagaggggagggatgaggtgtggttaggagttaaagttgaaatactgagtggctatgaagcaaaaagcattaacaa |
43713099 |
T |
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| Q |
618 |
gcaatatttttaaatattttccaaatgacaaagtt |
652 |
Q |
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| T |
43713098 |
gcaatatttttaaatattttccaaatgacaaagtt |
43713064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 52894095 - 52894351
Alignment:
| Q |
15 |
cacagattcttgaagcttttggacgtacattcttggttcttgttttgcagttatgttcttgatgcttttgtcattgcacccattctttgtaagtgatgaa |
114 |
Q |
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| T |
52894095 |
cacagattctt-aagcttttggatgtacattgttggttcttgttttgctgttaagttctcga-gcttttgtccttgcacccattctctgtaagagatgaa |
52894192 |
T |
|
| Q |
115 |
ggggattgcatatttatttgaggcatttatt-ggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttagga |
213 |
Q |
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| || |||||||||||||| ||||||||||| ||||| ||| || ||| || | || ||||||||||||||||| ||||||||||||||||||||| | |
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| T |
52894193 |
gagggttgcatatttatttcaggcatttatttggctcagtgatcaaagttggtctatgggtctaagagtttgcagttttgaaatgcctgcgagtttagta |
52894292 |
T |
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| Q |
214 |
agctgaggttcccattgatttcaaatgatgttggattcaggaaactgtggagtttagcg |
272 |
Q |
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|| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
52894293 |
tgccgaggttcccattgatttcagaggatgttggattcaggaaactgtggagtttagcg |
52894351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 42572532 - 42572471
Alignment:
| Q |
379 |
ttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatattacatataat |
440 |
Q |
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| T |
42572532 |
ttcaatgtcatgatacctgatcagaaattaattgaaaattaaaccgtgatgttacatataat |
42572471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 617 - 649
Target Start/End: Complemental strand, 42572412 - 42572380
Alignment:
| Q |
617 |
agcaatatttttaaatattttccaaatgacaaa |
649 |
Q |
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| T |
42572412 |
agcaatatttttaaataatttccaaatgacaaa |
42572380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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