View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_10 (Length: 448)
Name: NF20398_low_10
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 36 - 274
Target Start/End: Complemental strand, 45538881 - 45538643
Alignment:
| Q |
36 |
cttatttattgtgtgtgattgtgaatattcaccatagctttgtaaacctctttatctctatgaacaaagctacttgaagagcttacctcttgaaagagga |
135 |
Q |
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| T |
45538881 |
cttatttattgtgtgtgattgtgaatattcaccatagctttgtaaacctctttatctctatgcacaaagctacttgaagagcttacctcttgaaagagga |
45538782 |
T |
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| Q |
136 |
actaattgttggcatgactcataatttactgataagtgggtaggtcactcgaggtttgtgtgttctctgtaaccctaatcttgaatactagaaaggcacc |
235 |
Q |
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| T |
45538781 |
actaattgttggcatgactcataatttactgataagtgggtaggtcactcgaggtttgtgtgttctctgtaaccctaatcttgaatactagaaaggcacc |
45538682 |
T |
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| Q |
236 |
actacaaccactctacagttggagacataggcaaaattg |
274 |
Q |
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| T |
45538681 |
actacaaccactctacagttggagacataggcaaaattg |
45538643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 299 - 438
Target Start/End: Complemental strand, 45538644 - 45538505
Alignment:
| Q |
299 |
tgtgttctctatttgtgtttttcctatttgttttcttttgaacctaagttgttgttataacactaacattcagtgtgttcaaatgcagaatgtatccctc |
398 |
Q |
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| T |
45538644 |
tgtgttctctatttgtgtttttcctatttgttttcttttgaacctaagttgttgttctaacactaacattcagtgtgttcaaatgcagaatgtatccctc |
45538545 |
T |
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| Q |
399 |
tctgttaatgacattcttgcatgctgtggccttctctgtg |
438 |
Q |
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| T |
45538544 |
tctgttaatgacattcttgcatgctgtggccttctttgtg |
45538505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 45545493 - 45545440
Alignment:
| Q |
374 |
tgttcaaatgcagaatgtatccctctctgttaatgacattcttgcatgctgtgg |
427 |
Q |
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| T |
45545493 |
tgttcaattgcagaatatatccctctctgttaacgaccttcttgcatgctgtgg |
45545440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 45545835 - 45545732
Alignment:
| Q |
36 |
cttatttattgtgtgtgatt-gtgaatattcaccatagctttgtaaacctctttatctctatgaacaaagctacttgaagagcttacctcttgaaagagg |
134 |
Q |
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|||| ||||||||||| || ||||||||||||||| |||||||| ||||||||||||| | ||| | |||||||| | ||| |||||||||||||| |
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| T |
45545835 |
cttacttattgtgtgtatttcgtgaatattcaccatgactttgtaa-cctctttatctctgttcacacacctacttgagggccttgcctcttgaaagagg |
45545737 |
T |
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| Q |
135 |
aacta |
139 |
Q |
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||||| |
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| T |
45545736 |
aacta |
45545732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 5455950 - 5456012
Alignment:
| Q |
297 |
tgtgtgttctctatttgtgtttttcctatttgttttcttttgaacctaagttgttgttataac |
359 |
Q |
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| T |
5455950 |
tgtgtgttctctgtttgtgtttttcatatctgttttctttagaaccaaagttgttgttctaac |
5456012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 27318409 - 27318450
Alignment:
| Q |
149 |
atgactcataatttactgataagtgggtaggtcactcgaggt |
190 |
Q |
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| T |
27318409 |
atgacacatagtttactgataagtgggtaggtcgctcgaggt |
27318450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 28026980 - 28026909
Alignment:
| Q |
270 |
aattggcagaactccgcgatcaagt-tctgtgtgttctctatttgtgtttttcctatttgttttcttttgaac |
341 |
Q |
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| T |
28026980 |
aattggccgaactccacgatcaaatatct-tgtgttctctatttgtgtttttcgtatctttttacttttgaac |
28026909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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