View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_11 (Length: 422)
Name: NF20398_low_11
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 9e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 215 - 417
Target Start/End: Complemental strand, 16661027 - 16660828
Alignment:
| Q |
215 |
aatctttgcaattgatctatctcaaaatcgtactctttcactacgcttctctgcaaatatttgtatttttgttgtctatagacgaagtgacaaatatacc |
314 |
Q |
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| T |
16661027 |
aatctttgcaatt---ctatctcaaaatcatactctttcactacgcttctctgtaaatacttgtatttttgttgtctatagatgaagtgacaaacatacc |
16660931 |
T |
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| Q |
315 |
ctcaaactcacataaacaactttgaattccgttcaaacatgagtgaaggtgttcagcctaataatatcgacattttcacagttatcactcaagtataatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| | ||||||||||||| ||||||| |
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| T |
16660930 |
ctcaaactcacataaacaactttgaattccgttcaaacatgaatgaaggtgttcagcctaataacatcaacatttctatagttatcactcaattataatt |
16660831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 16661177 - 16661047
Alignment:
| Q |
17 |
caaaccgcctacttgattaatgttttcgagcccattatcactcagaccaatcagatgtttgttctaataaatattacacgacccatttaaagaatcatat |
116 |
Q |
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| T |
16661177 |
caaaccccttacttgcttaatgttttcgagcccattatcactcagacgaatcagatgtttgttctaataaatattagacgacccatttaaagaatcatat |
16661078 |
T |
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| Q |
117 |
taacaaaataaaaatgtttcaaaataagtgt |
147 |
Q |
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| T |
16661077 |
taacgaaataaaaatgtttcaaattaagtgt |
16661047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 16661027 - 16660988
Alignment:
| Q |
168 |
aatctttgcaattctatctcaaaatcatactcttttacta |
207 |
Q |
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| T |
16661027 |
aatctttgcaattctatctcaaaatcatactctttcacta |
16660988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 388
Target Start/End: Original strand, 883494 - 883525
Alignment:
| Q |
357 |
gtgaaggtgttcagcctaataatatcgacatt |
388 |
Q |
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| T |
883494 |
gtgaaggtgttcagcctaataatatcgacatt |
883525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 28588522 - 28588600
Alignment:
| Q |
230 |
tctatctcaaaatcgtactctttcactacgcttctctgcaaatatttgtatttttgttgtctatagacgaagtgacaaa |
308 |
Q |
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||||||||||| || ||||||||||||| || |||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
28588522 |
tctatctcaaagtcttactctttcactatgcatctctgaaaatacttgtatttttgttgtctatagacgaagtgacaaa |
28588600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 28588420 - 28588490
Alignment:
| Q |
17 |
caaaccgcctacttgattaatgttttcgagcccattatcactcagaccaatcagatgtttgttctaataaa |
87 |
Q |
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| T |
28588420 |
caaaccccctacttgcttattgtttttgagcccattatcactcagaccaatcagatgtttgttccaataaa |
28588490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 388
Target Start/End: Original strand, 28588781 - 28588853
Alignment:
| Q |
319 |
aactcacataaacaactttgaattcc---gttcaaacatgagtgaaggtgttcagcctaataatatcgacatt |
388 |
Q |
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| T |
28588781 |
aactcacataaacaacttcgaattcctaggttcaaacccgagtgaaagtgttcagcctagcaatatcggcatt |
28588853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 33965782 - 33965739
Alignment:
| Q |
345 |
gttcaaacatgagtgaaggtgttcagcctaataatatcgacatt |
388 |
Q |
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||||||||| | ||||||||||||||||||| |||||||||||| |
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| T |
33965782 |
gttcaaacacgggtgaaggtgttcagcctaacaatatcgacatt |
33965739 |
T |
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