View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_15 (Length: 384)
Name: NF20398_low_15
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 207 - 369
Target Start/End: Original strand, 4762998 - 4763163
Alignment:
| Q |
207 |
atgagaatgatcaccaaatccttgagtagatggtggatgttttggatgatta---ggttgagaagcaaagccttgagggatgagaataagagatgcaagg |
303 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4762998 |
atgagaatgatcaccaaatccttgagtagatagtggatggtttggatgatgatgaggttgagaagcaaagccttgagggatgagaataagagatgcaagg |
4763097 |
T |
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| Q |
304 |
aaaaacacaagcaagtatgaggaaaaagaagtcatcttaatcttaattagtgtgattttagtattg |
369 |
Q |
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| T |
4763098 |
aaaaacacaagcaagtatgaggaaaaagaagtcatcttaatcttaattagtgtgattttagtattg |
4763163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 227 - 369
Target Start/End: Original strand, 4638669 - 4638814
Alignment:
| Q |
227 |
cttgagtagatggtggatgttttggatgatta---ggttgagaagcaaagccttgagggatgagaataagagatgcaaggaaaaacacaagcaagtatga |
323 |
Q |
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|||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4638669 |
cttgagtagacggtggatggtttggatgatgatgaggttgagaagcaaagccttgagggatgagaataagagatgcaaggaaaaacacaagcaagtatga |
4638768 |
T |
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| Q |
324 |
ggaaaaagaagtcatcttaatcttaattagtgtgattttagtattg |
369 |
Q |
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| T |
4638769 |
ggaaaaagaagtcatcttaatcttaattagtgtgattttagtattg |
4638814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 4762858 - 4762997
Alignment:
| Q |
1 |
aacaaacagctcggtaactaagaccacttattcagtacatatacatttcataactctcatttcatactttagaaatgagtgttatcttcttttggagggt |
100 |
Q |
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| T |
4762858 |
aacaaacagcttggtaactaggaccacttattcagtacatatacatttcataactctcatttcatactttagaaatgattgttatcttcttttggagggt |
4762957 |
T |
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| Q |
101 |
ggtgaggatgtggtttgggaaagttggtaggatgtgtagg |
140 |
Q |
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| T |
4762958 |
ggtgaggatgtggtttgggtaagttggtaggatgtatagg |
4762997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4638455 - 4638586
Alignment:
| Q |
1 |
aacaaacagctcggtaactaagaccacttattcagtacatatacatttcataactctcatttcatactttagaaatgagtgttatcttcttttggagggt |
100 |
Q |
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| T |
4638455 |
aacaaacagcttggtaactaggaccacttattcagtacatatacatttcataactctcatttcatagtttagaaatgagtgttatcttcttttggagggt |
4638554 |
T |
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| Q |
101 |
ggtgaggatgtggtttgggaaagttggtagga |
132 |
Q |
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| T |
4638555 |
ggtgaggatgtggtttgggtaagttggtagga |
4638586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4177208 - 4177099
Alignment:
| Q |
1 |
aacaaacagctcggtaactaagaccacttattcagtacatatacatttcataactctcatttcatactttagaaatgagtgttatcttcttttggagggt |
100 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4177208 |
aacaaacagcttggtaactagaaccacttattcagtacatatatatttcataactctcatttcatactttagaaatgagtgttatcttcttttggagggt |
4177109 |
T |
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| Q |
101 |
ggtgaggatg |
110 |
Q |
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|||||||||| |
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| T |
4177108 |
ggtgaggatg |
4177099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 270 - 369
Target Start/End: Original strand, 4668306 - 4668405
Alignment:
| Q |
270 |
aaagccttgagggatgagaataagagatgcaaggaaaaacacaagcaagtatgaggaaaaagaagtcatcttaatcttaattagtgtgattttagtattg |
369 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4668306 |
aaagccttgaggaatgagaatcagagatgcaaggaaaaacacaagcaagtatgaggaaaaagaagtcatcttaatcttaattagtgtgattttagtattg |
4668405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4181036 - 4180925
Alignment:
| Q |
1 |
aacaaacagctcggtaactaagaccacttattcagtacatatacat--ttcataactctcatttcatactttagaaatgagtgttatcttcttttggagg |
98 |
Q |
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||||||||||| |||||||| |||||| ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4181036 |
aacaaacagcttggtaactaggaccacctattcagtacatatatatagttcaaaactctcatttcatactttagaaatgagtgttatcttcttttggagg |
4180937 |
T |
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| Q |
99 |
gtggtgaggatg |
110 |
Q |
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| T |
4180936 |
gtggtgaggatg |
4180925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 4176988 - 4176915
Alignment:
| Q |
269 |
caaagccttgagggatgagaataagagatgcaaggaaaaacacaagcaagtatgaggaaaaagaagtcatctta |
342 |
Q |
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|||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||| ||||||| |
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| T |
4176988 |
caaagccttgagggatgagaatcagaaatgcaaagaaaaacacaagcaagtatgagaaaaaagaagccatctta |
4176915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 4180814 - 4180741
Alignment:
| Q |
269 |
caaagccttgagggatgagaataagagatgcaaggaaaaacacaagcaagtatgaggaaaaagaagtcatctta |
342 |
Q |
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|||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||| ||||||| |
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| T |
4180814 |
caaagccttgagggatgagaatcagaaatgcaaagaaaaacacaagcaagtatgagaaaaaagaagccatctta |
4180741 |
T |
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