View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_16 (Length: 375)
Name: NF20398_low_16
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 162 - 362
Target Start/End: Original strand, 34475673 - 34475873
Alignment:
| Q |
162 |
tatttgtaaaacaattagatgcttaagcaaataggacatacaagtccaaaactgatagcaaatatgtggttagaaaattatatttccataaagnnnnnnn |
261 |
Q |
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| T |
34475673 |
tatttgtaaaacaattagatgcttaagcaaataggacatacaagtccaaaactgatagcaaatatgtggttagaaaattatatttccataaagaaaaaaa |
34475772 |
T |
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| Q |
262 |
ntattatagattcatctaattgaaaaaatattattttaatgatcactcattgaatgcatctactaaatcaacatatttacattgtattttcaattgaaaa |
361 |
Q |
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| T |
34475773 |
atattatagattcatctaattgaaaaaatattattttaatgatcactcattgaatgcatctactaaatcaacatatttacattgtattttcaattgaaaa |
34475872 |
T |
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| Q |
362 |
c |
362 |
Q |
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| T |
34475873 |
c |
34475873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 34475523 - 34475599
Alignment:
| Q |
13 |
aaaattgagccgagcaaatattttaaacggtggaattgaatgaatgaaacaatgagtttaaatcataattatatgac |
89 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34475523 |
aaaattgagccgagcaaatattttaaacagtagaattgaatgaatgaaacgatgagtttaaatcataattatatgac |
34475599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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