View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_18 (Length: 363)
Name: NF20398_low_18
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 41266484 - 41266216
Alignment:
| Q |
7 |
tagattattctgctctaacgttttcatttttcctagttgataggatggattccttgacaatgccacatttttggtataaacaaaccttttcaataaaaat |
106 |
Q |
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| T |
41266484 |
tagattttactgctctaacgttttcatttttcctagttgataggatagattccttgacaatgccacatttttggtataaacaaaccttttgaataaaaat |
41266385 |
T |
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| Q |
107 |
attttggattagtttcgnnnnnnnnaagaaaaaaccgattttgttttaaaagcgtctccaacgaagatatttaagtaagtttcatagaagaatgaacgtg |
206 |
Q |
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| T |
41266384 |
attttggattagtttcgtttttta-aagaaaaaaccgattttgttttaaaagcgtctccaacgaagatatttaaataagtttcatagaataatgaacata |
41266286 |
T |
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| Q |
207 |
ttttttctctttttattgaaataacttaacgttataaagttagtagcatagaaatcaaagaagtagttta |
276 |
Q |
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| T |
41266285 |
ttttttctcttcttattgaaataacttgacgttataaagttagtagcatagaaatcaaagaagtagttta |
41266216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 3405834 - 3405778
Alignment:
| Q |
249 |
gtagcatagaaatcaaagaagtagtttaaattagatatgatattatcattaatgttt |
305 |
Q |
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| T |
3405834 |
gtagcataaaaatcatagaagtagtttaaataagatataatattatcattaatgttt |
3405778 |
T |
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