View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_2 (Length: 628)
Name: NF20398_low_2
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 17 - 591
Target Start/End: Original strand, 16695878 - 16696449
Alignment:
| Q |
17 |
ataaaattatataattgaatctcaatgatttgagcttggttagtagaaaaattgtataatatatactagagtcagagtttaaatcataaagaccttgttt |
116 |
Q |
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| T |
16695878 |
ataaaattatataattgaatctcaatgatttgaactcggttagtagaaaaattgtataatatatactagggtcggagtttaaatcataaagaccttattt |
16695977 |
T |
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| Q |
117 |
attcatcttaaaaggtgaatttcaaatcactgcgttattaacaaaaataaataataatcaggcgcagccccgtcacaaacccacttcctatgtgacaagg |
216 |
Q |
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| T |
16695978 |
attcatcttaaaaggtgaatttcaagtcattgcgttattaacaaaaagaaataataatcaggcgcagccc-gtcacaaacccacttcctatgtgacaagg |
16696076 |
T |
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| Q |
217 |
taaacaaacttactcctaaaataaaatgatatagcagtgttttctttaaggttttgagtaaatttgttaaaaacttttctttttgtttaaggaatataaa |
316 |
Q |
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| T |
16696077 |
taaacaaacttactcctaaaatcaaatgatatagcagtgttttctttaaggttttgagtaaatttgttaaaaacttttctttttg-------aatataaa |
16696169 |
T |
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| Q |
317 |
tgtattatttttgggtgcaatgatgat---ttgtatgaaaataatcaatagtaccatcatacacggaaattgatcacgttcatcatcgtagta--cctgg |
411 |
Q |
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| T |
16696170 |
tgtattatttttgggtgcaatgatgatgatttctatgaaaataatcaatagtaccatcatacacggaaattgatcacgttcatcatcgtagtatacctgg |
16696269 |
T |
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| Q |
412 |
aaaaagtttgttttggatatattctagggatatggcaagcgtgcattatcaatttcaattatattatgaacttgaatattgtgatttactactttttatg |
511 |
Q |
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| T |
16696270 |
aaaaagtttgttttggatatattctagggatatggcaagcgtgcattatcaatttcaaatatattatgaacttgaatattgtgatttactactttttatg |
16696369 |
T |
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| Q |
512 |
caattttctgtattaaagaattaagattccaaattcaagtaaaataattttaactggttataacactgttacttcattat |
591 |
Q |
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| T |
16696370 |
caattttctgtattaaagaattaagattccaaattcaagtaaaataattttaactggttataacactgttacttcattat |
16696449 |
T |
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