View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_23 (Length: 341)
Name: NF20398_low_23
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 37035004 - 37035312
Alignment:
| Q |
16 |
acagaggatatccaacctaacgatattggtattatcggttggttatactaggccttacgagactcaacattgtttttctctacatcgggaatgttcctaa |
115 |
Q |
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| T |
37035004 |
acagaggatatccaacctaacgatattggtattatcggttggttatattaggccttacgaaactcaacattgtttttctctacaccgggaatgttcctaa |
37035103 |
T |
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| Q |
116 |
atgattaaacattttttccttttgaaaacaaatattcccttgacattactttggttttttagaatcataaaaagctttgatctgtttcaaaacttcgatg |
215 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37035104 |
atgattaaacattttttccttttaaaaacaaatattcccttgacattactttggtttcttagaatcataaaaaactttgatctgtttcaaaacttcgatg |
37035203 |
T |
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| Q |
216 |
gttacttttgtttcttcaa-cctcgtttagtggcaaagttactctttaggcttccaaatttctccatctattaaatggaactactagcattgagatgaca |
314 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
37035204 |
gttacttttgtttcttcaacccccgtttagtggcaaagttactctttaggcttccaaatttctccatctattaaatgaaactactagcattgaaatgaca |
37035303 |
T |
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| Q |
315 |
tgcatttca |
323 |
Q |
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||||||||| |
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| T |
37035304 |
tgcatttca |
37035312 |
T |
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