View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_29 (Length: 301)
Name: NF20398_low_29
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 42883714 - 42883443
Alignment:
| Q |
18 |
agaatgaaccaaaatttgtgtatctttgattggtcattaacaaaagaagatcatgagaaaattgctcaaattaagcagaaccgtttgatccctggaccaa |
117 |
Q |
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| T |
42883714 |
agaatgaaccaaaatttgtgtatctttgattggtcattgacaaaggaggatcatgagaagattgatcaaattaagcaaaatcgtttgatccctggaccaa |
42883615 |
T |
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| Q |
118 |
ccaagccaggcatcaatgacctctatgatgattnnnnnnnntgttaaagtccttttaaatttgccataaaatctatgttttcgatttacttattgtatac |
217 |
Q |
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| T |
42883614 |
ccaaaccaggcatcaatgacctctatgatgattaaaaaaaatgttaaagtccttttaaatttgccataaaatctatcttttcgatttacttattgtatac |
42883515 |
T |
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| Q |
218 |
ttgttgtttcttttgagcttaggattacccttgtttttgaatcgagtttgaataatcaattttacatttcat |
289 |
Q |
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| T |
42883514 |
ttgttgtttcttttgagcttaggattacccttgttttttaatcgagtttgaataatcaattttacatttcat |
42883443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 42890718 - 42890848
Alignment:
| Q |
18 |
agaatgaaccaaaatttgtgtatctttgattggtcattaacaaaagaagatcatgagaaaattgctcaaattaagcagaaccgtttgatccctggaccaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||| |||||||||||| || ||||||||||||||||||| |
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| T |
42890718 |
agaatgaaccaaaatttgtgtatctttgattggtcattgacaaaggaggatcatgagaagattgatcaaattaagcaaaatcgtttgatccctggaccaa |
42890817 |
T |
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| Q |
118 |
ccaagccaggcatcaatgacctctatgatga |
148 |
Q |
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| T |
42890818 |
ccaaaccaggcatcaatgacctctatgatga |
42890848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 42874583 - 42874453
Alignment:
| Q |
18 |
agaatgaaccaaaatttgtgtatctttgattggtcattaacaaaagaagatcatgagaaaattgctcaaattaagcagaaccgtttgatccctggaccaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||| |||||||||||| || ||||||||||||||||||| |
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| T |
42874583 |
agaatgaaccaaaatttgtgtatctttgattggtcattgacaaaggaggatcatgagaagattgatcaaattaagcaaaatcgtttgatccctggaccaa |
42874484 |
T |
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| Q |
118 |
ccaagccaggcatcaatgacctctatgatga |
148 |
Q |
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|||| |||||| ||||||||||||||||||| |
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| T |
42874483 |
ccaaaccaggcctcaatgacctctatgatga |
42874453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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