View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20398_low_3 (Length: 624)
Name: NF20398_low_3
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 341 - 615
Target Start/End: Complemental strand, 7488639 - 7488365
Alignment:
| Q |
341 |
caaacaaataaagtttgtttcattgactcctaatttgtaggttacttcaacagttgaaaaattgagctcagaagggatatcagagaagatgaatttagga |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7488639 |
caaacaaataaagtttgtttcattgactcctaatttgtaggttacttcaacagttgaaaaattgagcttagaagggatatcagagaagatgaatttagga |
7488540 |
T |
|
| Q |
441 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7488539 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
7488440 |
T |
|
| Q |
541 |
cctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatccttcatgaaacaaaaccctatg |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7488439 |
cctttctgaaaaggaggcacataaacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatg |
7488365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 7488959 - 7488705
Alignment:
| Q |
19 |
ccttcgtccctgtaggatcttctctaggtgtgtggtcactggtcattcttctatgttctaattcatgattctgattacatttctgcttattgattcttgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7488959 |
ccttcgtccctgtaggatcttctctaggtgtgtggtcactggtcattcttctatgttctaattcatgattctgattacatttttgcttattgattcttgc |
7488860 |
T |
|
| Q |
119 |
gctgtgagtttaatcttgttctgttcattgaatctgcgtatgttgaatttgttttgtgatcattcataaaagaagaaaatatatatatttgaacacagta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7488859 |
gctgtgagtttaatcttgttctgttcattgaatctgcctatgttgaatttgttttgtgatcattcataaaagaagaaaatat--atatttgaacacagta |
7488762 |
T |
|
| Q |
219 |
catgcctgcaacgttctcagttcagttttgttctgttcattgaatctgctatgttga |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7488761 |
catgcctgcaacgttctcagttcagttttgttctgttcattgaatctgctatgttga |
7488705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 416 - 553
Target Start/End: Complemental strand, 7475700 - 7475563
Alignment:
| Q |
416 |
gatatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtct |
515 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||||||||| |||||||| || |||| ||||||||| | |||||| ||||||||| ||| |
|
|
| T |
7475700 |
gatatcggagaagatgagtttaggaatagatttagagattgagattttagtgtggctgccattaaagtcattgatgagctttagacttgttcaacgttct |
7475601 |
T |
|
| Q |
516 |
tggaatgatcttactcagaaccccacctttctgaaaag |
553 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
7475600 |
tggaatgatcttattcagacccccacctttctgaaaag |
7475563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 441 - 570
Target Start/End: Original strand, 7873146 - 7873275
Alignment:
| Q |
441 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
540 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| |||||| |||||||| |||||||||||||| |||| |||||||||||||||| |||||| || | |
|
|
| T |
7873146 |
atagatttagagacggagattttggtgtgacttcttctaaagtcattgattcgttttagatgtgttgaacgttcttggaatgatcttattcagaaaccta |
7873245 |
T |
|
| Q |
541 |
cctttctgaaaaggaggcacataaacatgt |
570 |
Q |
| |
|
||||| ||||||| ||||| || ||||||| |
|
|
| T |
7873246 |
cctttatgaaaagaaggcagatgaacatgt |
7873275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 417 - 596
Target Start/End: Original strand, 6943480 - 6943659
Alignment:
| Q |
417 |
atatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtctt |
516 |
Q |
| |
|
||||| |||| | |||||||||| ||||||||||||| |||||||||| |||||| || ||||| ||||||||| ||| |||||||||||||| |||| |
|
|
| T |
6943480 |
atatcggagatggtgaatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcttttcagatgtgttcaacgatctt |
6943579 |
T |
|
| Q |
517 |
ggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatcctt |
596 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||||||| || ||||||| || ||| ||| ||||||| ||||||||||||| |
|
|
| T |
6943580 |
ggaatgttcttgttcagagccctgcctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatcctt |
6943659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 7873012 - 7873048
Alignment:
| Q |
348 |
ataaagtttgtttcattgactcctaatttgtaggtta |
384 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
7873012 |
ataacgtttgtttcattgactcctaatttgtcggtta |
7873048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 42053823 - 42053788
Alignment:
| Q |
209 |
gaacacagtacatgcctgcaacgttctcagttcagt |
244 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42053823 |
gaacacagtacatggctgcaacgttctcagttcagt |
42053788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University