View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_32 (Length: 288)
Name: NF20398_low_32
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 41795569 - 41795299
Alignment:
| Q |
1 |
aaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaacacttgtatgatgttttgaaacaagaatttgatgttgtctccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41795569 |
aaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaacacttgtatgatgttttgaaacaagaatttgatgttgtctccaa |
41795470 |
T |
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| Q |
101 |
ggaaaaacagaaacttcaagaagaggtaactaattatctttggattgtttgcataaggtaggatgaatttgaatgaaattggaatgag----ataacatc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41795469 |
ggaaaaacagaaacttcaagaagaggtaactaattatctttggattgtttgcataaggtaggatgaatttgaatgaaattggaatgagatatataacatc |
41795370 |
T |
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| Q |
197 |
tannnnnnnnnnnnnnattatgtaactatatttcattaatttataccaccaatctcaacataatctcacatatttgt |
273 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41795369 |
ta------ttttttttattatgtaactatatttcattaatttataccaccaatctcaacataatctcacatatttgt |
41795299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26932265 - 26932332
Alignment:
| Q |
1 |
aaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaacacttgtatgat |
68 |
Q |
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|||||||| |||||||||||||||| ||| | ||||||||| | ||||| ||||||||||| |||||| |
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| T |
26932265 |
aaattgctatttggttccaaaatagacgtgctaggtggaagaccaagcaacttgaacacttatatgat |
26932332 |
T |
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