View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_34 (Length: 270)
Name: NF20398_low_34
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 41335008 - 41334767
Alignment:
| Q |
15 |
tctgcaggtatattcaagaagatattattattacaaaggaataggaataaataaattcaatcttttgtgaaagnnnnnnnnnnnnnnn-cttacttgctg |
113 |
Q |
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| T |
41335008 |
tctgcaagtatattcaagaagatattattattacaaaggaataggaataaataaattcactctttagtgaaagaaaaaaaaagaaaaaacttacttgctg |
41334909 |
T |
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| Q |
114 |
ccagttgagaggatctaaataagatggaatagaagagaaaaccatggtgtttcaatcctttagcg--nnnnnnnnnnnnngtctttaataaagtttgat- |
210 |
Q |
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| T |
41334908 |
ccaattgagaggatctaaataagatggaatagaagagaaaaccatggtgtttcaatcctttagcgtttttatttttttttgtctttaataaagtttgatg |
41334809 |
T |
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| Q |
211 |
ggctctttagggagatggtggagaatcacactatagtggaat |
252 |
Q |
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| T |
41334808 |
ggctctttagggagatggtggagaatcacactatagtggaat |
41334767 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 23663129 - 23663083
Alignment:
| Q |
193 |
tctttaataaagttt-gatggctctttagggagatggtggagaatca |
238 |
Q |
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| T |
23663129 |
tcttttataaagttttgatggctctttagggagatggtggagaatca |
23663083 |
T |
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