View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_35 (Length: 266)
Name: NF20398_low_35
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_35 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 34192553 - 34192301
Alignment:
| Q |
15 |
tatggggagatgaagctgaaggagaaacaagaagaatagtaggaacctagtaagtatgcttaaattgatgactttaatttgtttctttataaaccataaa |
114 |
Q |
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| T |
34192553 |
tatggggagatgaagctgaaggagaaacaagaagaatagtaggaacttagtaagtatgcttaaattgatgactttaatttgtttctttataaactataaa |
34192454 |
T |
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| Q |
115 |
tattcactatcctgttttctaagcccagtatcctt-ttttctttactgtgtttcagtggttacatgtctccagagttcgcgacacgtggatttttctcgg |
213 |
Q |
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| T |
34192453 |
tattcactatcatgttttctaagcccagtatcctttttttctttactgtgtttcagtggttacatgtctccagaattcgcgacacgtggatttttctcgg |
34192354 |
T |
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| Q |
214 |
tgaaatctgatgtctttagttttggcgttattatactagagacaattagtgga |
266 |
Q |
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| T |
34192353 |
tgaaatctgatgtctttagttttggcgttattatactagagacaattagtgga |
34192301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 34219098 - 34219355
Alignment:
| Q |
15 |
tatggggagatgaagctgaaggagaaacaagaagaatagtaggaacctagtaagtatgcttaaattgatgactttaatttgtttctttataaaccataaa |
114 |
Q |
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| T |
34219098 |
tatggggagatgaagcaaaaggggtaacaagaagagtagtaggaacttagtaagcatacttcaat----gactttaatttgttgcttcataaattataaa |
34219193 |
T |
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| Q |
115 |
tattcactatcctgttttctaagcccagtatcc---------ttttttctttactgt--gtttcagtggttacatgtctccagagttcgcgacacgtgga |
203 |
Q |
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| T |
34219194 |
tattcactactct-tttcctaagccccgtatctgttccgtctttttttctttattatttgtttcagtggttacatatctccagagtatgcagcacgtgga |
34219292 |
T |
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| Q |
204 |
tttttctcggtgaaatctgatgtctttagttttggcgttattatactagagacaattagtgga |
266 |
Q |
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| T |
34219293 |
tttttctcggtgaaatctgatgtctttagttttggtgctattatactagagataattagtgga |
34219355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 34207948 - 34208192
Alignment:
| Q |
15 |
tatggggagatgaagctgaaggagaaacaagaagaatagtaggaacctagtaagtatgcttaaattgatgactttaatttgtttctttataaaccataaa |
114 |
Q |
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| T |
34207948 |
tatggggagatgaagctgaagtcgaaacaattagagtagtaggaactcagtaagcatgcttaaact----acttgaattttttgctttatgaaacataaa |
34208043 |
T |
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| Q |
115 |
tattca-cta-tcctgttttctaagcccagtatccttt-tttctttactgtgttt--cagtggttacatgtctccagagttcgcgacacgtggatttttc |
209 |
Q |
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| T |
34208044 |
tattctgctgctcct-tttcctaagcccggtatcttttctttctttattatttttttcagtggttacatatctccagagtatgcagcacgtggatttttc |
34208142 |
T |
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| Q |
210 |
tcggtgaaatctgatgtctttagttttggcgttattatactagagacaat |
259 |
Q |
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| T |
34208143 |
tccgtgaaatcagatgtctttagtttcggtgttattatactagagacaat |
34208192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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