View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20398_low_36 (Length: 264)

Name: NF20398_low_36
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20398_low_36
NF20398_low_36
[»] chr4 (6 HSPs)
chr4 (119-251)||(39916268-39916400)
chr4 (16-117)||(26494399-26494500)
chr4 (16-117)||(37987181-37987282)
chr4 (20-117)||(29096098-29096195)
chr4 (119-248)||(39916085-39916214)
chr4 (42-85)||(2930542-2930585)
[»] chr5 (3 HSPs)
chr5 (17-117)||(15974133-15974233)
chr5 (16-117)||(18768356-18768457)
chr5 (16-117)||(28866427-28866523)
[»] scaffold0060 (1 HSPs)
scaffold0060 (16-126)||(35649-35759)
[»] chr6 (3 HSPs)
chr6 (17-110)||(20613224-20613317)
chr6 (40-100)||(14533493-14533553)
chr6 (74-114)||(33582516-33582556)
[»] chr2 (5 HSPs)
chr2 (16-117)||(30076479-30076580)
chr2 (16-115)||(5887857-5887956)
chr2 (17-116)||(17303239-17303338)
chr2 (17-92)||(14735707-14735782)
chr2 (42-114)||(4580840-4580912)
[»] chr8 (2 HSPs)
chr8 (34-117)||(27084464-27084547)
chr8 (54-112)||(33012346-33012404)
[»] chr3 (6 HSPs)
chr3 (40-116)||(1829376-1829451)
chr3 (33-100)||(29438268-29438335)
chr3 (48-87)||(1609819-1609858)
chr3 (44-101)||(4221071-4221128)
chr3 (74-114)||(38639904-38639944)
chr3 (40-100)||(43615706-43615766)
[»] chr7 (6 HSPs)
chr7 (33-100)||(19362414-19362481)
chr7 (42-117)||(40955137-40955212)
chr7 (33-84)||(44629240-44629291)
chr7 (39-100)||(44598457-44598518)
chr7 (75-110)||(28756142-28756177)
chr7 (49-114)||(12467867-12467932)
[»] chr1 (6 HSPs)
chr1 (42-114)||(49289645-49289717)
chr1 (42-114)||(50432277-50432349)
chr1 (33-100)||(52453949-52454016)
chr1 (74-114)||(13658578-13658618)
chr1 (42-116)||(23825912-23825986)
chr1 (39-100)||(170887-170948)
[»] scaffold0006 (1 HSPs)
scaffold0006 (74-114)||(148339-148379)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 39916268 - 39916400
Alignment:
Q  119 catacaattcaatttacgagtctttgttgaagcaatcttttcgaaggaagtagattcaacttcttttgctaaaatgatgatctttttagcggactacctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39916268 catacaattcaatttacgagtctttgttgaagcaatcttttcgaaggatgtagattcaacttcttttgctaaaatgatgatctttttagcggactacctg 39916367  T
Q  219 taaatagttttgtatgcattctctctttgacct 251  Q
    |||||| ||||||||||||||||||||||||||    
T  39916368 taaataattttgtatgcattctctctttgacct 39916400  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 26494500 - 26494399
Alignment:
Q  16 gcaacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcca 115  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||| |||||||||||||||    
T  26494500 gcaacaactaaattattattgaaattatacacctaatatagtatataagggaaatctgggggatgtcatggcacctgcctgccctttagaagatccgcca 26494401  T
Q  116 ct 117  Q
    ||    
T  26494400 ct 26494399  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 37987181 - 37987282
Alignment:
Q  16 gcaacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcca 115  Q
    |||||||||||||||||| ||| |||||||| ||||| || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37987181 gcaacaactaaattgttaatgagattatacatctaatctaatatataagggaaatctgggggatgccatggcacctgcctgccccttagaagatccgcca 37987280  T
Q  116 ct 117  Q
    ||    
T  37987281 ct 37987282  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 29096195 - 29096098
Alignment:
Q  20 caactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgccact 117  Q
    ||||| |||||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29096195 caactgaattgttatcaaaattatgcacctaatatagtaaataagggaaatctgggggatgccatggcacctgcctgccccttagaagatccgccact 29096098  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 248
Target Start/End: Original strand, 39916085 - 39916214
Alignment:
Q  119 catacaattcaatttacgagtctttgttgaagcaatcttttcgaaggaagtagattcaacttcttttgctaaaatgatgatctttttagcggactacctg 218  Q
    |||| ||||||||||  |||||| | | ||||||| |||||| || || ||| ||||||||||||||||||||  |||||||||||||||||||| | ||    
T  39916085 catataattcaatttttgagtctctctagaagcaaccttttctaaagatgtaaattcaacttcttttgctaaagcgatgatctttttagcggactgcttg 39916184  T
Q  219 taaatagttttgtatgcattctctctttga 248  Q
    |||||||||||||||| ||||| |||||||    
T  39916185 taaatagttttgtatgtattctttctttga 39916214  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 2930542 - 2930585
Alignment:
Q  42 atacacctaatatagtatataagaaaaatctgggggatgccatg 85  Q
    ||||||||||||||||||||| ||||||| || |||||||||||    
T  2930542 atacacctaatatagtatatatgaaaaatttgtgggatgccatg 2930585  T

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Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 15974133 - 15974233
Alignment:
Q  17 caacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgccac 116  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15974133 caacaactaaattgttattgaaatcatacacctaatatagtatataaggaaaatctaggggatgccatggcacctgcctgccccttagaagatccgccac 15974232  T
Q  117 t 117  Q
    |    
T  15974233 t 15974233  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 18768356 - 18768457
Alignment:
Q  16 gcaacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcca 115  Q
    ||||||| | ||||||||| ||| |||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18768356 gcaacaattgaattgttatagaatttatacacctaatatagtatataagggaaacctgggggatgccatggcacctgcctgccccttagaagatccgcca 18768455  T
Q  116 ct 117  Q
    ||    
T  18768456 ct 18768457  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 28866427 - 28866523
Alignment:
Q  16 gcaacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcca 115  Q
    |||||||||||||||||||||||||| |||||||||||||     ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28866427 gcaacaactaaattgttattgaaattgtacacctaatata-----taagggaaatctgggggatgccatggcacctgcctgccccttagaagatccgcca 28866521  T

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Target: scaffold0060 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 35759 - 35649
Alignment:
Q  16 gcaacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcca 115  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| || |||||||||| |||||||||||    
T  35759 gcaacaactgaattattattgaaattatacacctaatatagtatataagggaaatctgggggatgccatggcacttggctgccccttaaaagatccgcca 35660  T
Q  116 ctacatacaat 126  Q
    || ||| ||||    
T  35659 ctgcattcaat 35649  T

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Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 20613224 - 20613317
Alignment:
Q  17 caacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatc 110  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||    
T  20613224 caacaactgaattgttattgaaattatacacctaatatagtatataagggaaatctgggggatgccatggcacctacctgccccttataagatc 20613317  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 14533553 - 14533493
Alignment:
Q  40 ttatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgcccc 100  Q
    |||||| ||||||||||||||| || ||| | |||||||| ||||||||||||||||||||    
T  14533553 ttatactcctaatatagtatatcaggaaactttgggggataccatggcacctgcctgcccc 14533493  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 33582556 - 33582516
Alignment:
Q  74 ggggatgccatggcacctgcctgccccttagaagatccgcc 114  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  33582556 ggggatgccatggcacctgcctgcccttgagaagatccgcc 33582516  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 30076479 - 30076580
Alignment:
Q  16 gcaacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcca 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  30076479 gcaacaactaaattgttattgaaattatacaccaaatatagtatataatggaaatctgggggatgccataacacctgcctgtcccttagaagatccgcca 30076578  T
Q  116 ct 117  Q
    ||    
T  30076579 ct 30076580  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 5887956 - 5887857
Alignment:
Q  16 gcaacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcca 115  Q
    |||||||| ||||| ||||||| |||||||||||||| |||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5887956 gcaacaaccaaattattattgatattatacacctaatgtagtatataagggaaatctgggggatgccatggcacctacctgccccttagaagatccgcca 5887857  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 17303239 - 17303338
Alignment:
Q  17 caacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgccac 116  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  17303239 caacaaccgaattgttattgatattatacacctaatatagtatataagggaaatctgggggatgccataacacctgcctgctccttagaagatccgccac 17303338  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 14735707 - 14735782
Alignment:
Q  17 caacaactaaattgttattgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctg 92  Q
    ||||||| ||||| | ||||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  14735707 caacaaccaaattctaattgatataatacacctaatatagtatataagaaaaatctggggaatgccatggcccctg 14735782  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 4580840 - 4580912
Alignment:
Q  42 atacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcc 114  Q
    ||||| ||||||| ||||||||||||||||||||||||||| ||||  | ||| |||||||||||||||||||    
T  4580840 atacagctaatattgtatataagaaaaatctgggggatgccgtggcctccgccggccccttagaagatccgcc 4580912  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 27084464 - 27084547
Alignment:
Q  34 ttgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgccact 117  Q
    ||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||  |  ||||||||||||    
T  27084464 ttgaaataatacacctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaaagagatccgccact 27084547  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 33012346 - 33012404
Alignment:
Q  54 tagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccg 112  Q
    |||||||||||  |||||||||||||| ||||||||||||||| |||||||||||||||    
T  33012346 tagtatataagggaaatctgggggatgtcatggcacctgcctgtcccttagaagatccg 33012404  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 1829451 - 1829376
Alignment:
Q  40 ttatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgccac 116  Q
    ||||||||||||||||||||||||   ||||||| || |||||||| |||||||||||| |||||||||||||||||    
T  1829451 ttatacacctaatatagtatataaaggaaatctgagg-atgccatgacacctgcctgcctcttagaagatccgccac 1829376  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 29438335 - 29438268
Alignment:
Q  33 attgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgcccc 100  Q
    ||||| ||||||| |||||||||||||||||| ||| | |||||||| ||||||||||||||||||||    
T  29438335 attgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctgcccc 29438268  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 1609858 - 1609819
Alignment:
Q  48 ctaatatagtatataagaaaaatctgggggatgccatggc 87  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  1609858 ctaatatagtatataagcaaaatctgggggatgccgtggc 1609819  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 4221128 - 4221071
Alignment:
Q  44 acacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgcccct 101  Q
    |||||||||| |  ||||||| |||| ||||||||||||||||| |||||||| ||||    
T  4221128 acacctaatacaaaatataaggaaaacctgggggatgccatggcccctgcctgtccct 4221071  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 38639944 - 38639904
Alignment:
Q  74 ggggatgccatggcacctgcctgccccttagaagatccgcc 114  Q
    |||||||||||||||||||||||||||| |  |||||||||    
T  38639944 ggggatgccatggcacctgcctgcccctgaagagatccgcc 38639904  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 43615766 - 43615706
Alignment:
Q  40 ttatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgcccc 100  Q
    |||||| |||||||||||||||||| ||| | | ||||||  |||| ||||||||||||||    
T  43615766 ttatactcctaatatagtatataaggaaactttaggggataacatgacacctgcctgcccc 43615706  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 19362481 - 19362414
Alignment:
Q  33 attgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgcccc 100  Q
    ||||| ||||||| |||||||||||||||||| ||| | |||||||| ||||||||||||||||||||    
T  19362481 attgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctgcccc 19362414  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 40955137 - 40955212
Alignment:
Q  42 atacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgccact 117  Q
    ||||| ||||||| ||||||||| |||| |||||||||||| |||| |  ||| | ||||||||||||||||||||    
T  40955137 atacaactaatattgtatataaggaaaacctgggggatgccgtggccctcgccggtcccttagaagatccgccact 40955212  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 44629291 - 44629240
Alignment:
Q  33 attgaaattatacacctaatatagtatataagaaaaatctgggggatgccat 84  Q
    ||||| || ||||||||||||||||||||||| |||| ||||||||||||||    
T  44629291 attgatataatacacctaatatagtatataaggaaaacctgggggatgccat 44629240  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 44598518 - 44598457
Alignment:
Q  39 attatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgcccc 100  Q
    ||||||| |||||||||||||||||| ||| | |||||||| ||||| ||||||||| ||||    
T  44598518 attatactcctaatatagtatataaggaaactttgggggataccatgacacctgcctacccc 44598457  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 28756142 - 28756177
Alignment:
Q  75 gggatgccatggcacctgcctgccccttagaagatc 110  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28756142 gggatgccatggcacctgcctgccctttagaagatc 28756177  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 12467867 - 12467932
Alignment:
Q  49 taatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcc 114  Q
    |||||| ||||||||| |||| |||||||||||| ||||  | ||| || ||||||||||||||||    
T  12467867 taatattgtatataaggaaaacctgggggatgccgtggcctccgccggctccttagaagatccgcc 12467932  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 49289717 - 49289645
Alignment:
Q  42 atacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcc 114  Q
    ||||| ||||||| ||||||||| ||||||||||||||||| ||||  | ||| |||||||||||||||||||    
T  49289717 atacagctaatattgtatataaggaaaatctgggggatgccgtggcctccgccggccccttagaagatccgcc 49289645  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 50432349 - 50432277
Alignment:
Q  42 atacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgcc 114  Q
    ||||| ||||||| ||||||||| ||||||||||||||||| ||||  | ||| ||||||||||||| |||||    
T  50432349 atacagctaatattgtatataaggaaaatctgggggatgccgtggcctccgccggccccttagaagaaccgcc 50432277  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 52453949 - 52454016
Alignment:
Q  33 attgaaattatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgcccc 100  Q
    ||||| ||||||| |||||||||||||||||| ||| | |||||||| ||||| ||| ||||||||||    
T  52453949 attgatattatactcctaatatagtatataaggaaactttgggggataccatgacacttgcctgcccc 52454016  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 13658578 - 13658618
Alignment:
Q  74 ggggatgccatggcacctgcctgccccttagaagatccgcc 114  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  13658578 ggggatgccatggcacctgcctgcccttgagaagatccgcc 13658618  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 23825986 - 23825912
Alignment:
Q  42 atacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgccccttagaagatccgccac 116  Q
    ||||||||||||||||||||||  |||| |||| ||||| |||||| ||||| || |||| |  |||||||||||    
T  23825986 atacacctaatatagtatataaagaaaacctggaggatgacatggcccctgcttgtccctaaagagatccgccac 23825912  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 170948 - 170887
Alignment:
Q  39 attatacacctaatatagtatataagaaaaatctgggggatgccatggcacctgcctgcccc 100  Q
    ||||||| ||||||||| |||||||| ||| | ||||||||  |||||||||||||| ||||    
T  170948 attatactcctaatatactatataaggaaactttgggggatatcatggcacctgccttcccc 170887  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 148339 - 148379
Alignment:
Q  74 ggggatgccatggcacctgcctgccccttagaagatccgcc 114  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  148339 ggggatgccatggcacctgcctgcccttgagaagatccgcc 148379  T

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