View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_38 (Length: 255)
Name: NF20398_low_38
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 53054 - 52961
Alignment:
| Q |
147 |
tttgagtaatacctcttgaacatggaaacattatgataaattggaccataaagatatggatcattctttacaattggtgcattttcaatctctg |
240 |
Q |
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| T |
53054 |
tttgagtaatacctcttgaacatggaaacattatgataaattggaccataaagatttggatcattctttacaattggtgcattttcaatctctg |
52961 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 53181 - 53117
Alignment:
| Q |
20 |
gtttgatgtcggtttttaaaatcattcaaaacaaaacacattcatattagtgaaatttcagaaac |
84 |
Q |
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| T |
53181 |
gtttgatgtcggtttttaaaatcattcaaaacaaaacacattcatatttgtgaaatttcagaaac |
53117 |
T |
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