View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_low_6 (Length: 535)
Name: NF20398_low_6
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 322
Target Start/End: Original strand, 26782182 - 26782473
Alignment:
| Q |
30 |
tttatcaaaaagtaaacttaactacacaaaattttcaaatcccaacttagaatcataatacacgaatgcgtgtaagtttgataaaatagtagtttgatag |
129 |
Q |
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| T |
26782182 |
tttatcaaaaagtaaacttagctacacaaaattttcaaaccccaacttagaatcataatacacgaatgcgtgtaagttcgataaaatagtagtttgatag |
26782281 |
T |
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| Q |
130 |
ttgcaaggactatatcaaagtccatacaacaatagataaacaatagcttttcaaaacagaagagcacactgcgaaaaccgaaaaactttaatgatcaaag |
229 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||| |
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| T |
26782282 |
ttgcaaggactatatcaaagtccatgcaacaatagataaacaatagcttttcaaaacagaagagcacactacgaaaaccgaaaaacaaaaacgagcaaag |
26782381 |
T |
|
| Q |
230 |
aaactttaattgcttttatgtatgtttagagaaccttaaagaataaccgttcatatattcttttacaccaagaaaattcaatttctaatgtaa |
322 |
Q |
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| T |
26782382 |
aaactttaatttc-tttatgtatgtttggagaaccttaaagaataaccgttcatatattcttttacaccaagaaaattcaatttctaatgtaa |
26782473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 388 - 518
Target Start/End: Original strand, 26782539 - 26782669
Alignment:
| Q |
388 |
gtaattgatgaatgaagtattgtgaatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggatgaagaaagcaattgctt |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26782539 |
gtaattgatgaatgaagtattgtgaatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggaggaagaaagcaattgctt |
26782638 |
T |
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| Q |
488 |
gcatatataggaatatgtagtagtaattttt |
518 |
Q |
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| T |
26782639 |
gcatatataggaatatgtagtagtaattttt |
26782669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 396 - 518
Target Start/End: Original strand, 26829217 - 26829339
Alignment:
| Q |
396 |
tgaatgaagtattgtgaatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggatgaagaaagcaattgcttgcatatat |
495 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||| || ||| |
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| T |
26829217 |
tgaatgaagtattgccaatgccaagttcttctaggagttgggaacaaaagtgccaacatatccaaatgccatgatgaagaaagcaaacgcttggatgtat |
26829316 |
T |
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| Q |
496 |
aggaatatgtagtagtaattttt |
518 |
Q |
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||||||||| || ||| |||||| |
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| T |
26829317 |
aggaatatgaagaagtgattttt |
26829339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 390 - 504
Target Start/End: Original strand, 26788852 - 26788966
Alignment:
| Q |
390 |
aattgatgaatgaagtattgtgaatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggatgaagaaagcaattgcttgc |
489 |
Q |
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||||| ||||| |||||||| ||||||||||||| ||||||||| | ||||||||| ||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
26788852 |
aattggtgaataaagtattgccaatgccaagttcttctaggagttagaaacaaaagtgccaacgtatccaaatgccaggatgaagaaagcaatagcttga |
26788951 |
T |
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| Q |
490 |
atatataggaatatg |
504 |
Q |
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|| |||| ||||||| |
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| T |
26788952 |
atgtataagaatatg |
26788966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 390 - 518
Target Start/End: Original strand, 26815689 - 26815817
Alignment:
| Q |
390 |
aattgatgaatgaagtattgtgaatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggatgaagaaagcaattgcttgc |
489 |
Q |
| |
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||||| |||||| |||| || |||||||| |||| ||| ||||| ||||||||||| |||||||||||||| |||| ||||| |||||| | |||||| |
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| T |
26815689 |
aattggtgaatggagtactgccaatgccaaattcttctatgagttaggaacaaaagtgccaacatatccaaatgccacgatgagaaaagcagtcgcttgc |
26815788 |
T |
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| Q |
490 |
atatataggaatatgtagtagtaattttt |
518 |
Q |
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|| |||||||||||| || |||||||||| |
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| T |
26815789 |
atgtataggaatatgaagaagtaattttt |
26815817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 41921426 - 41921369
Alignment:
| Q |
431 |
agttgggaacaaaagttccaacatatccaaaggccaggatgaagaaagcaattgcttg |
488 |
Q |
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|||||||||| || ||||| ||||||||||| |||| ||||||||| || |||||||| |
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| T |
41921426 |
agttgggaacgaaggttccgacatatccaaatgccatgatgaagaaggcgattgcttg |
41921369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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