View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20398_low_9 (Length: 464)

Name: NF20398_low_9
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20398_low_9
NF20398_low_9
[»] chr4 (12 HSPs)
chr4 (16-449)||(18686347-18686777)
chr4 (18-449)||(18676307-18676732)
chr4 (25-449)||(18696153-18696574)
chr4 (11-352)||(18720910-18721253)
chr4 (11-266)||(18652402-18652657)
chr4 (143-398)||(18681724-18681980)
chr4 (18-272)||(18728420-18728671)
chr4 (143-350)||(18726005-18726212)
chr4 (301-449)||(18728273-18728418)
chr4 (306-449)||(18652249-18652389)
chr4 (63-124)||(18700968-18701029)
chr4 (386-449)||(18720837-18720900)
[»] chr6 (48 HSPs)
chr6 (25-121)||(28795426-28795522)
chr6 (25-123)||(26851564-26851662)
chr6 (25-121)||(28789402-28789498)
chr6 (28-122)||(26805561-26805655)
chr6 (25-122)||(27662399-27662499)
chr6 (28-121)||(26659014-26659107)
chr6 (28-121)||(26764985-26765078)
chr6 (289-339)||(26626438-26626488)
chr6 (289-339)||(26732415-26732465)
chr6 (28-122)||(27715527-27715621)
chr6 (291-336)||(25077321-25077366)
chr6 (25-108)||(26638440-26638526)
chr6 (25-108)||(26744406-26744492)
chr6 (291-339)||(28789662-28789710)
chr6 (225-345)||(31287817-31287937)
chr6 (25-108)||(26952641-26952724)
chr6 (292-339)||(28795687-28795734)
chr6 (25-117)||(26876596-26876688)
chr6 (291-339)||(27657553-27657601)
chr6 (291-330)||(26659268-26659307)
chr6 (291-330)||(26765239-26765278)
chr6 (25-111)||(26826917-26827003)
chr6 (28-122)||(27608137-27608231)
chr6 (28-122)||(27674585-27674679)
chr6 (28-122)||(27695597-27695691)
chr6 (25-95)||(28142686-28142756)
chr6 (25-105)||(26626165-26626248)
chr6 (25-105)||(26732142-26732225)
chr6 (28-108)||(27590170-27590250)
chr6 (25-96)||(27657793-27657865)
chr6 (28-120)||(27681996-27682088)
chr6 (25-115)||(26061602-26061690)
chr6 (25-115)||(26081572-26081660)
chr6 (42-97)||(27528708-27528763)
chr6 (304-342)||(27682251-27682289)
chr6 (401-430)||(25514247-25514276)
chr6 (401-430)||(25583089-25583118)
chr6 (401-430)||(26059310-26059339)
chr6 (401-430)||(26079280-26079309)
chr6 (25-90)||(26887828-26887893)
chr6 (297-338)||(27589957-27589998)
chr6 (297-342)||(27674377-27674422)
chr6 (25-77)||(2170649-2170701)
chr6 (25-101)||(26962134-26962210)
chr6 (25-101)||(27074279-27074355)
chr6 (298-342)||(27695404-27695448)
chr6 (298-342)||(27715337-27715381)
chr6 (25-108)||(31287620-31287706)
[»] chr1 (2 HSPs)
chr1 (28-120)||(265354-265446)
chr1 (25-108)||(26139024-26139107)
[»] chr2 (1 HSPs)
chr2 (25-114)||(17990171-17990260)
[»] scaffold0277 (4 HSPs)
scaffold0277 (25-121)||(1735-1831)
scaffold0277 (25-121)||(10701-10797)
scaffold0277 (291-339)||(10489-10537)
scaffold0277 (291-338)||(1524-1571)
[»] scaffold0419 (2 HSPs)
scaffold0419 (25-97)||(10552-10624)
scaffold0419 (291-339)||(10812-10860)
[»] scaffold0349 (1 HSPs)
scaffold0349 (28-122)||(16324-16418)
[»] chr8 (2 HSPs)
chr8 (28-122)||(29270863-29270957)
chr8 (401-446)||(29270563-29270608)
[»] scaffold0286 (1 HSPs)
scaffold0286 (25-77)||(12560-12612)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 18686777 - 18686347
Alignment:
Q  16 aggattagcattccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattc 115  Q
    |||| ||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18686777 aggaataggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctataattattc 18686678  T
Q  116 ttccggatgctcaatatatttcttgcagatttaagttgtttgtcaatggttatgaatgtacatctccaaattttgaatttaaatggcgattttcttcggg 215  Q
    ||||||||| |||||||| ||    ||||||||| |||||||||||||||||||||||||||| |||| | ||  |||||| || ||    || ||||||    
T  18686677 ttccggatgttcaatataattt---cagatttaatttgtttgtcaatggttatgaatgtacatttccagaattcaaatttagatcgccgcatttttcggg 18686581  T
Q  216 acatacatatttgtttgatatgaatttggaagaaaatattgaacactgtaaaatattttacgggatcaatttcgagtctgaaatggacaaagcactttta 315  Q
    |||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18686580 acatacatttttgtttgatatgaatttggaagaaaatattcaaggctgtaaaatatttcacgggatcaatttcgagtctgaaatggacaaagcactttta 18686481  T
Q  316 aaaaatgaatggatctatgtggagtttgagcttcattttttcattggggttcctgagaatgtgattaaaaggttaagaagtactgaaatgggaatccacg 415  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  18686480 aaaaatgaatggatctatgtggagtttaagcttcattttttcattggggttcctgtgaatgtgattaaaaggttaagaagtacagaaatgggaatccacg 18686381  T
Q  416 tgtggaaggagaaaaataacacgaatgaggatgt 449  Q
    |||||||||||||||| |||||||||||||||||    
T  18686380 tgtggaaggagaaaaacaacacgaatgaggatgt 18686347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 18676732 - 18676307
Alignment:
Q  18 gattagcattccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattctt 117  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18676732 gattaggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttccgtaaaaagatcccttctataacttctattattattctt 18676633  T
Q  118 ccggatgctcaatatatttcttgcagatttaagttgtttgtcaatggttatgaatgtacatctccaaattttgaatttaaatggcgattttcttcgggac 217  Q
    ||||||| |||| || |      ||||||||| ||||||||||||||||||||| |||||| |||| ||||| ||||||||||| |||||||||||||||    
T  18676632 ccggatgttcaacattt------cagatttaatttgtttgtcaatggttatgaacgtacatatccagattttaaatttaaatggggattttcttcgggac 18676539  T
Q  218 atacatatttgtttgatatgaatttggaagaaaatattgaacactgtaaaatattttacgggatcaatttcgagtctgaaatggacaaagcacttttaaa 317  Q
    || ||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18676538 atgcatatttgtttgatatgaatttggaagaaaatattcaacacttgaaaatattttacgggatcaatttcgagtctgcaatggacaaagcacttttaaa 18676439  T
Q  318 aaatgaatggatctatgtggagtttgagcttcattttttcattggggttcctgagaatgtgattaaaaggttaagaagtactgaaatgggaatccacgtg 417  Q
    ||||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||||||| || ||||||||||| |  |||||||||||||||||    
T  18676438 aaatgaatggatctatgtggagttgaagtttcattttttcattgggattcctgagaatgtgattcaagggttaagaagtgcaaaaatgggaatccacgtg 18676339  T
Q  418 tggaaggagaaaaataacacgaatgaggatgt 449  Q
    || ||||||||||| |||||||||||||||||    
T  18676338 tgcaaggagaaaaacaacacgaatgaggatgt 18676307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 25 - 449
Target Start/End: Complemental strand, 18696574 - 18696153
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccggatg 124  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  18696574 attccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttccgtaaaaagatcccttctataaattttattattattcttccggatg 18696475  T
Q  125 ctcaatatatttcttgcagatttaagttgtttgtcaatggttatgaatgtacatctccaaattttgaatttaaatggcgattttcttcgggacatacata 224  Q
     |  ||||| ||    |  |||||| |||||||||||||||||||| ||||||| |||| | |||||||| || ||||     | |||| ||||||||||    
T  18696474 ttggatatagttt---cgaatttaatttgtttgtcaatggttatgactgtacatttccagaatttgaattgaattggctgcagtgttcgagacatacata 18696378  T
Q  225 tttgtttgatatgaatttggaagaaaatattgaacactgtaaaatattttacgggatcaatttcgagtctgaaatggacaaagcacttttaaaaaatgaa 324  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||    
T  18696377 tttgtttgatatgaatttggaagaaaatgttgaactctgtaaaatatttcacgggatcaatttggaatctgaaatggacaaagcacttttaaaaaatgaa 18696278  T
Q  325 tggatctatgtggagtttgagcttcattttttcattggggttcctgagaatgtgattaaaaggttaagaagtactgaaatgggaatccacgtgtggaagg 424  Q
    |||||| ||||||||||| |||||| | |||||| ||||  ||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  18696277 tggatcaatgtggagtttaagcttcgtgttttcagtgggaatcctgagaaagtgattaaagggttaagaagtacagaaatgggaatccacgtgtggaagg 18696178  T
Q  425 agaaaaataacacgaatgaggatgt 449  Q
    |||||| |||||  |||||||||||    
T  18696177 agaaaagtaacataaatgaggatgt 18696153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 18721253 - 18720910
Alignment:
Q  11 cagagaggattagcattccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattat 110  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18721253 cagagaggattaggattccagattggttcgagcaccaaagcaggggtcattcaatttctttctggttctgtaaaaagatcccttctataacttttattat 18721154  T
Q  111 tattcttccggatgctcaatatatttcttgcagatttaagttgtttgtcaatggttatgaatgt--acatctccaaattttgaatttaa--atgg-cgat 205  Q
    |||||||||||||| |  || | ||     || | |||| |||||||||||||||||||| |||  ||||||||| | ||||||| |||  |||| |       
T  18721153 tattcttccggatgttggatttgttca---caaagttaatttgtttgtcaatggttatgactgtgtacatctccagaatttgaatctaattatggtctgc 18721057  T
Q  206 tttcttcgggacatacatatttgtttgatatgaatttggaagaaaatattgaacactgtaaaatattttacgggatcaatttcgagtctgaaatggacaa 305  Q
     || | |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||||||||    
T  18721056 cttatccgggacatacatatttgtttgaaatgaatttggaagaaaatgttgaactctgtaaaatatttcacgggatcaatttggagtctgaaatggacaa 18720957  T
Q  306 agcacttttaaaaaatgaatggatctatgtggagtttgagcttcatt 352  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  18720956 agcacatttaaaaaatgaatggatctatgtggagtttaagcttcatt 18720910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 18652657 - 18652402
Alignment:
Q  11 cagagaggattagcattccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattat 110  Q
    ||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18652657 cagaggggattaggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttccgtaaaaagatcccttctataacttctattat 18652558  T
Q  111 tattcttccggatgctcaatatatttcttgcagatttaagttgtttgtcaatggttatgaatgtacatctccaaattttgaatttaaatggcgattttct 210  Q
    |||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||  ||||||    |||||||||| ||  | || |    
T  18652557 tattcttccggatgttcaatatatttctttcagatttaatttttttgtcaatggttatgaatgtacagttccaaaacacgaatttaaattgccgtatttt 18652458  T
Q  211 tcgggacatacatatttgtttgatatgaatttggaagaaaatattgaacactgtaa 266  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18652457 ttgggacatacatatttgtttgatatgaatttggaagaaaatattgaactctgtaa 18652402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 143 - 398
Target Start/End: Complemental strand, 18681980 - 18681724
Alignment:
Q  143 gatttaagttgtttgtcaatggttatgaatgtacatctccaaattttgaatttaaatggcgattttcttcgggacatacatatttgtttgatatgaattt 242  Q
    ||||||| || ||||||||||||||||||||||||| |||| |  |  |||||||||| |    ||||||||||||||||||||||||||||||||||||    
T  18681980 gatttaatttttttgtcaatggttatgaatgtacatttccagaactccaatttaaatgtctgccttcttcgggacatacatatttgtttgatatgaattt 18681881  T
Q  243 ggaagaaaatattgaacactgtaaaatattttacgggatcaatttcgagtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggagttt 342  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18681880 ggaagaaaatattcaatgctgtaaaatatttcacgggatcaattttgagtctgaaatggacaaagcacttttaaaaaatgaacggatctatgtggagttt 18681781  T
Q  343 gagcttcattttttcattggggttcctgagaatgtgatt-aaaaggttaagaagtac 398  Q
     |||||||  ||||   |  | | ||||||||||||||| |||||||||||||||||    
T  18681780 aagcttcagattttatctatgatgcctgagaatgtgattaaaaaggttaagaagtac 18681724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 18728671 - 18728420
Alignment:
Q  18 gattagcattccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattctt 117  Q
    |||||| |||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18728671 gattaggattccagattggttcgagcatcaaagcaggggtcattcaatttctttctggttctgtaaaaagatcccttctataacttttattattattctt 18728572  T
Q  118 ccggatgctcaatatatttcttgcagatttaagttgtttgtcaatggttatgaatgtacatctccaaattttgaatttaaatggcgattttcttcgggac 217  Q
    ||| ||| | ||||   || ||   ||||||| ||||||||||| ||| |||||||||||  || ||| || ||||||| |  ||  | || ||||||||    
T  18728571 ccgaatgttgaata---ttatttaggatttaatttgtttgtcaaaggtcatgaatgtacagttcaaaaattcgaatttagactgccgtatttttcgggac 18728475  T
Q  218 atacatatttgtttgatatgaatttggaagaaaatattgaacactgtaaaatatt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18728474 atacatatttgtttgatatgaatttggaagaaaatattgaacactataaaatatt 18728420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 143 - 350
Target Start/End: Complemental strand, 18726212 - 18726005
Alignment:
Q  143 gatttaagttgtttgtcaatggttatgaatgtacatctccaaattttgaatttaaatggcgattttcttcgggacatacatatttgtttgatatgaattt 242  Q
    ||||||| || ||||||||||||||||||||||||| |||| |  |  |||||||||| |    ||||||||||||||||||||||||||||||||||||    
T  18726212 gatttaatttttttgtcaatggttatgaatgtacatttccagaactccaatttaaatgtcttccttcttcgggacatacatatttgtttgatatgaattt 18726113  T
Q  243 ggaagaaaatattgaacactgtaaaatattttacgggatcaatttcgagtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggagttt 342  Q
    ||||||||||||| ||  ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18726112 ggaagaaaatattcaatgctgtaaaatatttcacgggatcaatttcaagtctgaaatggacaaagcacttttaaaaaatgaacggatctatgtggagttt 18726013  T
Q  343 gagcttca 350  Q
     |||||||    
T  18726012 aagcttca 18726005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 301 - 449
Target Start/End: Complemental strand, 18728418 - 18728273
Alignment:
Q  301 gacaaagcacttttaaaaaatgaatggatctatgtggagtttgagcttcattttttcattggggttcctgagaatgtgattaaaaggttaagaagtactg 400  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||   | | || ||||||||||| | |||||||||||||||||||| |    
T  18728418 gacaaagcacttttaaaaaatgaatggatctatgtggagttgaagcttcagttt---agttggattcctgagaatattattaaaaggttaagaagtacag 18728322  T
Q  401 aaatgggaatccacgtgtggaaggagaaaaataacacgaatgaggatgt 449  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||||    
T  18728321 aaatgggaatccacgtgcgcaaggagaaaaacaacacgaatgaggatgt 18728273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 306 - 449
Target Start/End: Complemental strand, 18652389 - 18652249
Alignment:
Q  306 agcacttttaaaaaatgaatggatctatgtggagtttgagcttcattttttcattggggttcctgagaatgtgattaaaaggttaagaagtactgaaatg 405  Q
    ||||||||||||||||||||||||||||||||||||| || |||| |||   | | || | |||| | ||||| || |||||||||||||||| ||||||    
T  18652389 agcacttttaaaaaatgaatggatctatgtggagtttaaggttcagttt---agtaggatgcctgcggatgtggttcaaaggttaagaagtacagaaatg 18652293  T
Q  406 ggaatccacgtgtggaaggagaaaaataacacgaatgaggatgt 449  Q
    ||||||||||||| |||||||||||| |||||||||||||||||    
T  18652292 ggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgt 18652249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 18701029 - 18700968
Alignment:
Q  63 aatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccggatg 124  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18701029 aatttctttctggttctgtaaaaagatcccatctataacttctattattattcttccggatg 18700968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 449
Target Start/End: Complemental strand, 18720900 - 18720837
Alignment:
Q  386 ggttaagaagtactgaaatgggaatccacgtgtggaaggagaaaaataacacgaatgaggatgt 449  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  18720900 ggttaagaagtacagaaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgt 18720837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 48)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 28795426 - 28795522
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgg 121  Q
    |||||||||||||||||||||||||||| |||  |  ||||||| |||||||| |||||||||||||||||||| | |||||||||| || ||||||    
T  28795426 attccagattggttcgagcaccaaagcaggggagacacaatttccttctggttttgtaaaaagatcccttctattatttctattattctttttccgg 28795522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 26851564 - 26851662
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccggat 123  Q
    |||||||||||||||||||||||||||| ||   |  ||||||| ||||||||  |||||||||||||||||||||| | |||||||||| ||||||||    
T  26851564 attccagattggttcgagcaccaaagcagggaaaacacaatttccttctggtttcgtaaaaagatcccttctataacatgtattattattgttccggat 26851662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 28789402 - 28789498
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgg 121  Q
    |||||||||||||||||||||||||||| |||  |  ||||||||||||||||  ||||||||||||||||||  | |||||||||| || ||||||    
T  28789402 attccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttctaatatttctattattctttttccgg 28789498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 26805561 - 26805655
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgga 122  Q
    ||||||||||| ||||||||||||||||| |   ||||||||||||||||  ||||| | |||||||||||||| | |||| |||||||||||||    
T  26805561 ccagattggtttgagcaccaaagcaagggacccacaatttctttctggtttcgtaaagaaatcccttctataacatgtatttttattcttccgga 26805655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 27662499 - 27662399
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaa---tcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgg 121  Q
    |||||||||||||||||||| |||  || ||| ||    ||||||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||||    
T  27662499 attccagattggttcgagcatcaagtcaggggacacaactcaatttctttctggttatgtaaaaagatcccttctataacttgtattattcttattccgg 27662400  T
Q  122 a 122  Q
    |    
T  27662399 a 27662399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 26659014 - 26659107
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgg 121  Q
    |||||||||||||||||||||| || ||| ||| || |||||||||||||  ||||||||||||||||||| | || |||| || |||||||||    
T  26659014 ccagattggttcgagcaccaaatcaggggacaaacagtttctttctggtttcgtaaaaagatcccttctattatttgtattcttcttcttccgg 26659107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 26764985 - 26765078
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgg 121  Q
    |||||||||||||||||||||| || ||| ||| || |||||||||||||  ||||||||||||||||||| | || |||| || |||||||||    
T  26764985 ccagattggttcgagcaccaaatcaggggacaaacagtttctttctggtttcgtaaaaagatcccttctattatttgtattcttcttcttccgg 26765078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 26626438 - 26626488
Alignment:
Q  289 gagtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggag 339  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  26626438 gagtctgaaatggacaaaacacttttaaaaaatgaatggatccatgtggag 26626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 26732415 - 26732465
Alignment:
Q  289 gagtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggag 339  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  26732415 gagtctgaaatggacaaaacacttttaaaaaatgaatggatccatgtggag 26732465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 27715621 - 27715527
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgga 122  Q
    ||||||||||| ||||||||||||| ||| |   ||||||||||||||||  ||||| | |||||||||||||||| ||| |||||| |||||||    
T  27715621 ccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgtaaagaaatcccttctataacttgtataattatttttccgga 27715527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 25077321 - 25077366
Alignment:
Q  291 gtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtg 336  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  25077321 gtctgaaatggacaaagcacttttaaaaaatgaatggatccatgtg 25077366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 26638440 - 26638526
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaat---caatttctttctggttctgtaaaaagatcccttctataacttctatt 108  Q
    |||||||||||||||||||| ||||||| ||| ||     ||||||||||||||||  ||||||||||||||||||| |||||||||    
T  26638440 attccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctatt 26638526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 26744406 - 26744492
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaat---caatttctttctggttctgtaaaaagatcccttctataacttctatt 108  Q
    |||||||||||||||||||| ||||||| ||| ||     ||||||||||||||||  ||||||||||||||||||| |||||||||    
T  26744406 attccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctatt 26744492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 28789662 - 28789710
Alignment:
Q  291 gtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggag 339  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  28789662 gtctgaaatggacaaagcacttttaaaaactgaatggatccatgtggag 28789710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 31287817 - 31287937
Alignment:
Q  225 tttgtttgatatgaatttggaagaaaatattgaacactgtaaaatattttacgggatcaatttcgagtctgaaatggacaaagcacttttaaaaaatgaa 324  Q
    |||||||||| |||| ||||||||| ||| | ||| ||  | || | |||| ||||| || | |||||||||||||||||||||||||||  ||||||||    
T  31287817 tttgtttgatctgaaattggaagaacataataaacgcttgagaagaatttatgggattaagtacgagtctgaaatggacaaagcacttttggaaaatgaa 31287916  T
Q  325 tggatctatgtggagtttgag 345  Q
    ||||||  ||||||| |||||    
T  31287917 tggatccgtgtggagcttgag 31287937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 26952641 - 26952724
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctatt 108  Q
    |||||||||||||| |||||||||| || |||  |  ||||||||||||||||  ||| |||||||||||||||||||| ||||    
T  26952641 attccagattggtttgagcaccaaaccaggggagacacaatttctttctggtttcgtagaaagatcccttctataacttgtatt 26952724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 28795687 - 28795734
Alignment:
Q  292 tctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggag 339  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||    
T  28795687 tctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggag 28795734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 26876596 - 26876688
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattctt 117  Q
    |||||||| |||||| | ||||||| || ||| ||| ||||||||||||||||  ||||||||||||||| ||||  ||||||| || |||||    
T  26876596 attccagactggttccaacaccaaatcacgggacaaacaatttctttctggtttcgtaaaaagatcccttttatacgttctattgttcttctt 26876688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 27657601 - 27657553
Alignment:
Q  291 gtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggag 339  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||||    
T  27657601 gtctgaaatggacaaagaacttttgaaaaatgaatggatccatgtggag 27657553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 26659268 - 26659307
Alignment:
Q  291 gtctgaaatggacaaagcacttttaaaaaatgaatggatc 330  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  26659268 gtctgaaatggacaatgcacttttaaaaaatgaatggatc 26659307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 26765239 - 26765278
Alignment:
Q  291 gtctgaaatggacaaagcacttttaaaaaatgaatggatc 330  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  26765239 gtctgaaatggacaatgcacttttaaaaaatgaatggatc 26765278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 26826917 - 26827003
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattatt 111  Q
    ||||||||| |||| |||||||||||||  ||  |  ||||||||||||||||  ||||||| ||||||||||||  ||||||||||    
T  26826917 attccagatcggtttgagcaccaaagcagaggagacacaatttctttctggtttcgtaaaaaaatcccttctatacgttctattatt 26827003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 27608231 - 27608137
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgga 122  Q
    ||||||||||| ||||||||||||| ||| |   || |||||||||||||  ||||| | |||||||| ||||||| |||  |||||||||||||    
T  27608231 ccagattggtttgagcaccaaagcaggggactcacactttctttctggtttcgtaaagaaatcccttcaataacttgtatatttattcttccgga 27608137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 27674679 - 27674585
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgga 122  Q
    ||||||||||| ||||||||||||| |||  |  ||||||||||||||||  ||||| | ||||||||||| |||| ||||  ||||| ||||||    
T  27674679 ccagattggtttgagcaccaaagcaggggagacacaatttctttctggtttcgtaaagaaatcccttctatgacttatatttgtattcctccgga 27674585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 27695691 - 27695597
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgga 122  Q
    ||||||||||| ||||||||||||| |||  |  |||||||||| |||||   |||| | |||||||||||| ||| |||| |||||||||||||    
T  27695691 ccagattggtttgagcaccaaagcaggggagacacaatttctttttggtttcataaagaaatcccttctatatcttgtatttttattcttccgga 27695597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 28142686 - 28142756
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttc 95  Q
    |||||||| ||||| ||||||||||||||||| | ||||||| ||||||||||  || ||||| |||||||    
T  28142686 attccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 28142756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 26626165 - 26626248
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaat---caatttctttctggttctgtaaaaagatcccttctataacttct 105  Q
    |||||||||||||||||||| |||| || ||| ||     ||||||||||||||||  ||||||||||||||||||| ||||||    
T  26626165 attccagattggttcgagcatcaaatcaggggacacaacacaatttctttctggtttcgtaaaaagatcccttctattacttct 26626248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 26732142 - 26732225
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaat---caatttctttctggttctgtaaaaagatcccttctataacttct 105  Q
    |||||||||||||||||||| |||| || ||| ||     ||||||||||||||||  ||||||||||||||||||| ||||||    
T  26732142 attccagattggttcgagcatcaaatcaggggacacaacacaatttctttctggtttcgtaaaaagatcccttctattacttct 26732225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 27590250 - 27590170
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctatt 108  Q
    ||||||||||| ||||||||||||| |||  |  ||||||||||||||||  ||||| | ||||||||||| |||| ||||    
T  27590250 ccagattggtttgagcaccaaagcaggggagacacaatttctttctggtttcgtaaagaaatcccttctatgacttatatt 27590170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 27657865 - 27657793
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaat-caatttctttctggttctgtaaaaagatcccttct 96  Q
    ||||||||||||| ||||||||||| || |||   || ||||||||||||||||  |||||||||||||||||    
T  27657865 attccagattggtacgagcaccaaatcagggggagatacaatttctttctggtttcgtaaaaagatcccttct 27657793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 27681996 - 27682088
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccg 120  Q
    ||||||||||| ||||||||||||| ||| |    |||||||||||||||  ||||| | |||||||| ||||||| |||  |||||||||||    
T  27681996 ccagattggtttgagcaccaaagcaggggacccataatttctttctggtttcgtaaagaaatcccttcaataacttgtatatttattcttccg 27682088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 26061602 - 26061690
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattc 115  Q
    ||||||||||||||  ||||||||| || ||| ||  |||||| |||||||||  ||||| | |||||||||||||||  |||||||||||    
T  26061602 attccagattggttaaagcaccaaatcacgggaca--caatttttttctggtttcgtaaataaatcccttctataactagtattattattc 26061690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 26081572 - 26081660
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattc 115  Q
    ||||||||||||||  ||||||||| || ||| ||  |||||| |||||||||  ||||| | |||||||||||||||  |||||||||||    
T  26081572 attccagattggttaaagcaccaaatcacgggaca--caatttttttctggtttcgtaaataaatcccttctataactagtattattattc 26081660  T

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Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 27528763 - 27528708
Alignment:
Q  42 gcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttcta 97  Q
    |||| |||||||||| ||  ||||||||||||||||  ||||||||||||||||||    
T  27528763 gcacaaaagcaagggacacacaatttctttctggtttcgtaaaaagatcccttcta 27528708  T

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Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 27682251 - 27682289
Alignment:
Q  304 aaagcacttttaaaaaatgaatggatctatgtggagttt 342  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  27682251 aaaggacttttgaaaaatgaatggatctatgtggagttt 27682289  T

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Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 430
Target Start/End: Original strand, 25514247 - 25514276
Alignment:
Q  401 aaatgggaatccacgtgtggaaggagaaaa 430  Q
    ||||||||||||||||||||||||||||||    
T  25514247 aaatgggaatccacgtgtggaaggagaaaa 25514276  T

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Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 430
Target Start/End: Original strand, 25583089 - 25583118
Alignment:
Q  401 aaatgggaatccacgtgtggaaggagaaaa 430  Q
    ||||||||||||||||||||||||||||||    
T  25583089 aaatgggaatccacgtgtggaaggagaaaa 25583118  T

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Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 430
Target Start/End: Original strand, 26059310 - 26059339
Alignment:
Q  401 aaatgggaatccacgtgtggaaggagaaaa 430  Q
    ||||||||||||||||||||||||||||||    
T  26059310 aaatgggaatccacgtgtggaaggagaaaa 26059339  T

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Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 430
Target Start/End: Original strand, 26079280 - 26079309
Alignment:
Q  401 aaatgggaatccacgtgtggaaggagaaaa 430  Q
    ||||||||||||||||||||||||||||||    
T  26079280 aaatgggaatccacgtgtggaaggagaaaa 26079309  T

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Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 26887828 - 26887893
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatc 90  Q
    |||||||||||||| ||||||||||||| ||| ||  || |||||||||||||  ||||| |||||    
T  26887828 attccagattggtttgagcaccaaagcaggggacacacactttctttctggtttcgtaaagagatc 26887893  T

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Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 27589998 - 27589957
Alignment:
Q  297 aatggacaaagcacttttaaaaaatgaatggatctatgtgga 338  Q
    ||||||||||| |||||| ||||||||||||||| |||||||    
T  27589998 aatggacaaaggacttttgaaaaatgaatggatccatgtgga 27589957  T

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Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 27674422 - 27674377
Alignment:
Q  297 aatggacaaagcacttttaaaaaatgaatggatctatgtggagttt 342  Q
    |||||| |||| |||||| ||||||||||||||| |||||||||||    
T  27674422 aatggagaaaggacttttgaaaaatgaatggatccatgtggagttt 27674377  T

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Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 2170701 - 2170649
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggtt 77  Q
    |||||||| ||||| || || ||||||||||| | ||||||||||||||||||    
T  2170701 attccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtt 2170649  T

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Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 26962134 - 26962210
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataac 101  Q
    |||||||||||||| ||||||||||| |||||  |  || ||||||||||||   | |||||||||||| |||||||    
T  26962134 attccagattggtttgagcaccaaagaaagggagacacattttctttctggtatcgcaaaaagatccctactataac 26962210  T

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Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 27074279 - 27074355
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataac 101  Q
    |||||||||||||| ||||||| ||||| |||  |  |||||||||| |||||  ||||| |||||||| |||||||    
T  27074279 attccagattggtttgagcaccgaagcatgggaaatgcaatttctttttggtttagtaaagagatccctactataac 27074355  T

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Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 27695448 - 27695404
Alignment:
Q  298 atggacaaagcacttttaaaaaatgaatggatctatgtggagttt 342  Q
    |||||||||| |||||| |||| |||||||||| |||||||||||    
T  27695448 atggacaaaggacttttgaaaagtgaatggatccatgtggagttt 27695404  T

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Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 27715381 - 27715337
Alignment:
Q  298 atggacaaagcacttttaaaaaatgaatggatctatgtggagttt 342  Q
    |||||||||| |||||| |||| |||||||||| |||||||||||    
T  27715381 atggacaaaggacttttgaaaagtgaatggatccatgtggagttt 27715337  T

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Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 31287620 - 31287706
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaat---caatttctttctggttctgtaaaaagatcccttctataacttctatt 108  Q
    |||||| ||||||| |||||||||| || ||| |||    ||||| ||||||||||  ||||||||||||||||||| |||| ||||    
T  31287620 attccaaattggtttgagcaccaaatcaggggacaaagcacaattactttctggtttcgtaaaaagatcccttctattacttatatt 31287706  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 265446 - 265354
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccg 120  Q
    ||||||||||| |||||||||||||||||  |  ||||||||||||||||  ||||||||||||||||| | |||| ||||||||||||||||    
T  265446 ccagattggtttgagcaccaaagcaagggaaacacaatttctttctggtttcgtaaaaagatcccttctgttacttttattattattcttccg 265354  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 26139024 - 26139107
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctatt 108  Q
    ||||||||||||||||||||||||  |  ||| ||  |||||||||||||||| |||||||| ||||||||||||| |||||||    
T  26139024 attccagattggttcgagcaccaatccggggggcagacaatttctttctggttttgtaaaaaaatcccttctataagttctatt 26139107  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 17990260 - 17990171
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattatt 114  Q
    |||||||||||||| ||||||||||||| ||| ||  ||||||||||||||||  ||||| | |||||||||||||||||||| ||||||    
T  17990260 attccagattggtttgagcaccaaagcagggggcacacaatttctttctggtttcgtaaagaaatcccttctataacttctatcattatt 17990171  T

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Target: scaffold0277 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 1831 - 1735
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgg 121  Q
    |||||||||||||||||||||||||||| |||  |  ||||||||||||||||  ||||||||||||||||||  | |||||||||| || ||||||    
T  1831 attccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttctaatatttctattattctttttccgg 1735  T

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Target: scaffold0277; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 10797 - 10701
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgg 121  Q
    |||||||||||||||||||||||||||| |||  |  ||||||||||||||||  ||||||||||||||||||  | |||||||||| || ||||||    
T  10797 attccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttctaatatttctattattctttttccgg 10701  T

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Target: scaffold0277; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 10537 - 10489
Alignment:
Q  291 gtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggag 339  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  10537 gtctgaaatggacaaagcacttttaaaaactgaatggatccatgtggag 10489  T

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Target: scaffold0277; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 1571 - 1524
Alignment:
Q  291 gtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtgga 338  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  1571 gtctgaaatggaaaaagcacttttaaaaaatgaatggatccatgtgga 1524  T

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Target: scaffold0419 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 10552 - 10624
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttcta 97  Q
    |||||||||||||||||||||||||||| |||  |  ||||||||||||||||  ||||||||||||||||||    
T  10552 attccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttcta 10624  T

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Target: scaffold0419; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 10812 - 10860
Alignment:
Q  291 gtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggag 339  Q
    ||||||||||||| ||||| |||||| ||||||||||||| ||||||||    
T  10812 gtctgaaatggacgaagcaattttaagaaatgaatggatccatgtggag 10860  T

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Target: scaffold0349 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 16324 - 16418
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgga 122  Q
    ||||||||||| ||||||||||||| ||| |   ||||||||||||||||  ||||| | |||||||||||||||| ||| |||||| |||||||    
T  16324 ccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgtaaagaaatcccttctataacttgtataattatttttccgga 16418  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 29270957 - 29270863
Alignment:
Q  28 ccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggttctgtaaaaagatcccttctataacttctattattattcttccgga 122  Q
    |||||||||||||| |||||||||| ||| |   ||||||||||||||||  ||||| | ||||||||||| |||| |||| |||| ||||||||    
T  29270957 ccagattggttcgaacaccaaagcaggggacccacaatttctttctggtttcgtaaagaaatcccttctattacttgtatttttatgcttccgga 29270863  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 29270608 - 29270563
Alignment:
Q  401 aaatgggaatccacgtgtggaaggagaaaaataacacgaatgagga 446  Q
    |||||||||||||||||||||| |||||||  |||||| |||||||    
T  29270608 aaatgggaatccacgtgtggaatgagaaaagcaacacggatgagga 29270563  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 12560 - 12612
Alignment:
Q  25 attccagattggttcgagcaccaaagcaagggtcaatcaatttctttctggtt 77  Q
    |||||||| ||||| || || ||||||||||| | ||||||||||||||||||    
T  12560 attccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtt 12612  T

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