View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20399_low_2 (Length: 474)
Name: NF20399_low_2
Description: NF20399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20399_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 26102957 - 26102880
Alignment:
| Q |
86 |
ctaatatcctcttatttgttgttatcaacttaggtgatgaagttttggcaaatcaaacgtgtcatcaaataataatat |
163 |
Q |
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| T |
26102957 |
ctaatatcctcttatttgttgttatcaacttaggtgatgaacttttggcaaatcaaacgtgtcatcaaataataatat |
26102880 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 9925713 - 9925767
Alignment:
| Q |
290 |
aatgatgatagacgattaggatttccttaatcccttttatgtcattgtttggtaa |
344 |
Q |
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|||||||| |||||||||||||||||| |||||| |||||| ||||||||||| |
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| T |
9925713 |
aatgatgacagacgattaggatttcctaaatccccattatgttcttgtttggtaa |
9925767 |
T |
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