View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20399_low_3 (Length: 320)
Name: NF20399_low_3
Description: NF20399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20399_low_3 |
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| [»] chr3 (12 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 50814781 - 50814469
Alignment:
| Q |
8 |
ccaagaatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814781 |
ccaataatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagt |
50814682 |
T |
|
| Q |
108 |
tgggtcagggttttggtagttaggatgaaagaaggcagtatggtttcggagtaacggcactttataaactctcctctatctctaccaatcaccttaaaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814681 |
tgggtcagggttttggtagttaggatgaaagaaggcagtatggtttcggagtaacggcactttataaactctcctctatctctaccaatcaccttaaaga |
50814582 |
T |
|
| Q |
208 |
aagtcgtagttattgaatcatttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814581 |
aagtcgtagttattgaatcatttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattc |
50814482 |
T |
|
| Q |
308 |
taagtgaaggact |
320 |
Q |
| |
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||||||||||||| |
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| T |
50814481 |
taagtgaaggact |
50814469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 50861083 - 50861395
Alignment:
| Q |
8 |
ccaagaatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861083 |
ccaataatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagt |
50861182 |
T |
|
| Q |
108 |
tgggtcagggttttggtagttaggatgaaagaaggcagtatggtttcggagtaacggcactttataaactctcctctatctctaccaatcaccttaaaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861183 |
tgggtcagggttttggtagttaggatgaaagaaggcagtatggtttcggagtaacggcactttataaactctcctctatctctaccaatcaccttaaaga |
50861282 |
T |
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| Q |
208 |
aagtcgtagttattgaatcatttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861283 |
aagtcgtagttattgaatcatttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattc |
50861382 |
T |
|
| Q |
308 |
taagtgaaggact |
320 |
Q |
| |
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||||||||||||| |
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| T |
50861383 |
taagtgaaggact |
50861395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 50814500 - 50814361
Alignment:
| Q |
16 |
atgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcag |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
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| T |
50814500 |
atgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttcgttcaatgttaccctcttcaatttgagggatgtcaa |
50814401 |
T |
|
| Q |
116 |
ggttttggtagttaggatgaaagaaggcagtatggtttcg |
155 |
Q |
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||||||| ||||||| ||||||||||||||| |||||||| |
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| T |
50814400 |
ggttttgctagttagaatgaaagaaggcagtgtggtttcg |
50814361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 50861364 - 50861503
Alignment:
| Q |
16 |
atgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcag |
115 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
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| T |
50861364 |
atgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttcgttcaatgttaccctcttcaatttgagggatgtcaa |
50861463 |
T |
|
| Q |
116 |
ggttttggtagttaggatgaaagaaggcagtatggtttcg |
155 |
Q |
| |
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||||||| ||||||| ||||||||||||||| |||||||| |
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| T |
50861464 |
ggttttgctagttagaatgaaagaaggcagtgtggtttcg |
50861503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 39558896 - 39558757
Alignment:
| Q |
20 |
gaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgagttgggtcagggtt |
119 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| |||| |
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| T |
39558896 |
gaaaccgacagattctaagtgaaggacttttagcaagggaagattaacgaaaggaacttcgttcaatgttacactcttcaatttgaggactgtcaaggtt |
39558797 |
T |
|
| Q |
120 |
ttggtagttaggatgaaagaaggcagtatggtttcggagt |
159 |
Q |
| |
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||||||||||| | |||| |||||||||| | ||||||| |
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| T |
39558796 |
ttggtagttagaaccaaagcaggcagtatgatatcggagt |
39558757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 39559169 - 39559024
Alignment:
| Q |
11 |
agaatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggt---tcaatgttatcctcttcaatttgagt |
107 |
Q |
| |
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|||||||||| |||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||| | ||||||||| ||||||||||||||| |
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| T |
39559169 |
agaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcattcaatgttaccctcttcaatttgagg |
39559070 |
T |
|
| Q |
108 |
tgggtcagggttttggtagttaggatgaaagaaggcagtatggttt |
153 |
Q |
| |
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||||| ||||||| ||||||| | |||||||||| | |||||| |
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| T |
39559069 |
acggtcaaggttttgttagttagaactaaagaaggcaatgtggttt |
39559024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 49857492 - 49857588
Alignment:
| Q |
13 |
aatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaact---tggttcaatgttatcctcttcaatttgag |
106 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||||| ||| ||| | ||||||||||| |||||| || | ||||||||||||||||||||||||||| |
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| T |
49857492 |
aatatgtgaaacagacggattccaagtgaaggattttgagcgacggaagatcaaccaaaggaccttcatagttcaatgttatcctcttcaatttgag |
49857588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 39558966 - 39558869
Alignment:
| Q |
223 |
aatcatttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggact |
320 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||| | |||||||||||||| | ||||||| | || |||| |||||||||||||||||||||| |
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| T |
39558966 |
aatcctttgcttccaactcctctagaatgggacagccggatagaagtttcatgatgtactcataatgtgggaaaccgacagattctaagtgaaggact |
39558869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 50814834 - 50814742
Alignment:
| Q |
228 |
tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggact |
320 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||||| || | | |||| | | |||||||| ||||||||||||||||||||||| |
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| T |
50814834 |
tttgcttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaaggact |
50814742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 320
Target Start/End: Original strand, 50861030 - 50861122
Alignment:
| Q |
228 |
tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggact |
320 |
Q |
| |
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||||||||||||| |||||||| |||||||| |||||||||| || | | |||| | | |||||||| ||||||||||||||||||||||| |
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| T |
50861030 |
tttgcttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaaggact |
50861122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 316
Target Start/End: Complemental strand, 39559225 - 39559137
Alignment:
| Q |
228 |
tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaag |
316 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |
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| T |
39559225 |
tttgcttccaactcctctagaatgggacaaacagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaag |
39559137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 49760642 - 49760735
Alignment:
| Q |
13 |
aatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgag |
106 |
Q |
| |
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|||||||| || ||||| ||| ||||||||| |||| ||| | |||||||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
49760642 |
aatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaactccagtcaatgttatcctcttcaatttgag |
49760735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 19370925 - 19371002
Alignment:
| Q |
29 |
agattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgag |
106 |
Q |
| |
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|||||| | |||||| ||||| ||| |||||||||||||| | ||||||||| | ||||||||||||||||||||| |
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| T |
19370925 |
agattccatgtgaagtactttgagcgagggaagatcaacgtttgaaacttggttgattgttatcctcttcaatttgag |
19371002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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