View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20399_low_4 (Length: 313)
Name: NF20399_low_4
Description: NF20399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20399_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 302
Target Start/End: Complemental strand, 1792324 - 1792052
Alignment:
| Q |
30 |
tttgtccctagaaaatttgctaatacaaaaaactaatcatatagttcttttgtgataatttctcaatctgcctgtgcgaccccattagctatcgaaaggt |
129 |
Q |
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| T |
1792324 |
tttgtccctagaaaatttgctaatacaaaaaactaatcatatagttcttttgtgataatttctcaatctgcctgtatgaccccattagctatcgaaaggt |
1792225 |
T |
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| Q |
130 |
cctttcaataatatattttagccgaaataatatcgaaaggatccattcgatagtgtattttgagggcctatgagcatataagagggtgaattgagaaatt |
229 |
Q |
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| T |
1792224 |
cctttcaataatgtattttatccgaaataatatcgaaaggatccttccgatagtgtattttgggggcctatgagcatataagggggtgaattgagaaatt |
1792125 |
T |
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| Q |
230 |
atattttcataattttagaattatgttgagcagggttttaataggcccattaatgccttttccctagagaatt |
302 |
Q |
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| T |
1792124 |
atatttttataattttagaattatgttgagcagggttttaataggcccattgatgccttttccttagagaatt |
1792052 |
T |
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