View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20399_low_5 (Length: 312)
Name: NF20399_low_5
Description: NF20399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20399_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 36055042 - 36055324
Alignment:
| Q |
17 |
ctcttccctccctcctctcattgattttccttctcttcctctgccnnnnnnnnnnnnnnnnnnncacaaagccaaatacttgaaatgaaatcatcctcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| |
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| T |
36055042 |
ctcttccctccctcctctcattgattttccttctcttcctctgccttttttttttcttt-----cacaaaggcaaatacttgaaatgaaatcattctcaa |
36055136 |
T |
|
| Q |
117 |
ggtttccaaactattctacgactgcgatttgaactgcgacatcaaagttttttattcctctaatgtttctatcacgactacttgataacaattgaggccg |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36055137 |
ggtttccaaactattctatgactgcgatttgaactgcgacatcaaagttttttattcctctaatgtttctatcacgactacttgatcgcaattgaggccg |
36055236 |
T |
|
| Q |
217 |
attaaaccctattacgcgtgcgattctaaacattattgttaatcgcaacacaaccacggtttaaaaccctgcatatcattttcatctc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36055237 |
attaaaccctattacgcgtgcgattctaaacattattgttaatcgcaacgcaaccacggtttaaaaccctgcatatcattttcatctc |
36055324 |
T |
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