View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20399_low_6 (Length: 226)

Name: NF20399_low_6
Description: NF20399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20399_low_6
NF20399_low_6
[»] chr7 (14 HSPs)
chr7 (155-225)||(35776939-35777009)
chr7 (155-214)||(23455242-23455301)
chr7 (155-226)||(40110742-40110813)
chr7 (155-225)||(26162121-26162191)
chr7 (155-225)||(31632727-31632797)
chr7 (155-214)||(6498760-6498819)
chr7 (155-214)||(28539163-28539222)
chr7 (155-190)||(34398968-34399003)
chr7 (155-190)||(43955522-43955557)
chr7 (155-190)||(43955633-43955668)
chr7 (155-188)||(14603283-14603316)
chr7 (155-188)||(30629062-30629095)
chr7 (155-188)||(35455809-35455842)
chr7 (155-188)||(39342663-39342696)
[»] chr3 (15 HSPs)
chr3 (155-225)||(9129428-9129498)
chr3 (155-225)||(9137535-9137605)
chr3 (155-226)||(46672799-46672870)
chr3 (155-225)||(21307529-21307599)
chr3 (155-204)||(35279920-35279969)
chr3 (155-190)||(7302351-7302386)
chr3 (155-214)||(36397997-36398056)
chr3 (155-190)||(42005985-42006020)
chr3 (155-190)||(44436263-44436298)
chr3 (155-190)||(47767437-47767472)
chr3 (155-190)||(49457348-49457383)
chr3 (155-190)||(53129875-53129910)
chr3 (155-225)||(27251978-27252048)
chr3 (155-225)||(44692906-44692976)
chr3 (158-226)||(31070415-31070482)
[»] chr1 (13 HSPs)
chr1 (152-226)||(34756429-34756503)
chr1 (155-190)||(8224773-8224808)
chr1 (155-225)||(15034743-15034813)
chr1 (155-225)||(23536072-23536142)
chr1 (155-225)||(24273218-24273288)
chr1 (155-225)||(28632584-28632653)
chr1 (155-226)||(15034664-15034735)
chr1 (155-214)||(26501088-26501147)
chr1 (155-190)||(27804270-27804305)
chr1 (155-190)||(30190255-30190290)
chr1 (155-190)||(37036982-37037017)
chr1 (155-191)||(5474422-5474458)
chr1 (158-206)||(28745805-28745853)
[»] chr8 (6 HSPs)
chr8 (155-190)||(24044965-24045000)
chr8 (155-190)||(3853621-3853656)
chr8 (155-190)||(3858079-3858114)
chr8 (155-185)||(26520469-26520499)
chr8 (155-188)||(29257396-29257429)
chr8 (155-188)||(44346723-44346756)
[»] chr5 (22 HSPs)
chr5 (155-226)||(22766957-22767028)
chr5 (155-225)||(37722889-37722959)
chr5 (155-223)||(2721557-2721625)
chr5 (155-190)||(2316383-2316418)
chr5 (155-226)||(3563282-3563353)
chr5 (155-190)||(9894352-9894387)
chr5 (155-190)||(15374079-15374114)
chr5 (155-226)||(20523216-20523287)
chr5 (155-190)||(22303900-22303935)
chr5 (155-190)||(25935320-25935355)
chr5 (155-226)||(26281263-26281334)
chr5 (155-190)||(28828372-28828407)
chr5 (155-190)||(32389977-32390012)
chr5 (157-224)||(37145497-37145564)
chr5 (155-190)||(40643936-40643971)
chr5 (160-190)||(13243469-13243499)
chr5 (155-225)||(40090409-40090479)
chr5 (155-188)||(15804327-15804360)
chr5 (155-224)||(19533903-19533972)
chr5 (20-92)||(28103921-28103994)
chr5 (155-188)||(41762247-41762280)
chr5 (21-92)||(28101163-28101235)
[»] chr4 (9 HSPs)
chr4 (155-190)||(15660302-15660337)
chr4 (155-224)||(10633037-10633106)
chr4 (155-224)||(31473854-31473923)
chr4 (155-195)||(47108323-47108363)
chr4 (155-190)||(7352817-7352852)
chr4 (155-226)||(36455912-36455983)
chr4 (155-190)||(49111431-49111466)
chr4 (158-224)||(1539649-1539715)
chr4 (154-190)||(28845875-28845911)
[»] chr2 (17 HSPs)
chr2 (155-190)||(17180302-17180337)
chr2 (155-225)||(14365705-14365775)
chr2 (155-190)||(10480124-10480159)
chr2 (155-190)||(11684604-11684639)
chr2 (155-190)||(14537204-14537239)
chr2 (155-226)||(27033495-27033566)
chr2 (155-190)||(41461634-41461669)
chr2 (155-185)||(8736461-8736491)
chr2 (155-225)||(11532251-11532321)
chr2 (155-225)||(11793900-11793970)
chr2 (155-225)||(13017784-13017854)
chr2 (155-188)||(769041-769074)
chr2 (155-188)||(1583844-1583877)
chr2 (155-188)||(11141310-11141343)
chr2 (155-188)||(33189292-33189325)
chr2 (158-190)||(11716518-11716550)
chr2 (158-190)||(30698289-30698321)
[»] scaffold0048 (1 HSPs)
scaffold0048 (150-226)||(82943-83019)
[»] chr6 (3 HSPs)
chr6 (155-191)||(33733437-33733473)
chr6 (155-190)||(9285652-9285687)
chr6 (155-214)||(34244989-34245048)
[»] scaffold1562 (1 HSPs)
scaffold1562 (155-190)||(524-559)
[»] scaffold1158 (1 HSPs)
scaffold1158 (155-190)||(2034-2069)
[»] scaffold0400 (1 HSPs)
scaffold0400 (155-190)||(4531-4566)
[»] scaffold0365 (1 HSPs)
scaffold0365 (155-190)||(5175-5210)
[»] scaffold0169 (1 HSPs)
scaffold0169 (155-226)||(4080-4151)
[»] scaffold0044 (1 HSPs)
scaffold0044 (155-226)||(56357-56428)
[»] scaffold0449 (1 HSPs)
scaffold0449 (122-152)||(4312-4342)


Alignment Details
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 35777009 - 35776939
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||||||||||||||||||||||||||||  | || | ||||||| ||||||| ||| ||||||    
T  35777009 gtgtttggatgagggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattc 35776939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 23455301 - 23455242
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatacttt 214  Q
    |||||||||||||||||||||||||||||||||| |  |||| | ||||||| |||||||    
T  23455301 gtgtttggatgagggaatgttttgagggaatgtattgttttgagggaattcaaatacttt 23455242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 40110742 - 40110813
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    ||||||||||| ||||||||||||||||||||||||  |||| | |||||||  |||||| ||| |||||||    
T  40110742 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattct 40110813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 26162191 - 26162121
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| ||||||||||||||||||||||||  | || | ||||||| ||||||| ||| ||||||    
T  26162191 gtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattc 26162121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 31632727 - 31632797
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| ||||||||||||||||||||||||  | || | ||||||| ||||||| ||| ||||||    
T  31632727 gtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattc 31632797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 6498819 - 6498760
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatacttt 214  Q
    |||||||||||  |||||||||||||||||||||||  |||| | ||||||| |||||||    
T  6498819 gtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatacttt 6498760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 28539222 - 28539163
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatacttt 214  Q
    ||||||||||| |||||||||||||||||||||| |  |||| | ||||||| |||||||    
T  28539222 gtgtttggatgggggaatgttttgagggaatgtattgttttgagggaattcaaatacttt 28539163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 34399003 - 34398968
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  34399003 gtgtttggatgggggaatgttttgagggaatgtaat 34398968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 43955522 - 43955557
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43955522 gtgtttggatgggggaatgttttgagggaatgtaat 43955557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 43955668 - 43955633
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43955668 gtgtttggatgggggaatgttttgagggaatgtaat 43955633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 14603316 - 14603283
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  14603316 gtgtttggatgggggaatgttttgagggaatgta 14603283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 30629062 - 30629095
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  30629062 gtgtttggatgggggaatgttttgagggaatgta 30629095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 35455809 - 35455842
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  35455809 gtgtttggatgggggaatgttttgagggaatgta 35455842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 39342696 - 39342663
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  39342696 gtgtttggatgggggaatgttttgagggaatgta 39342663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 9129498 - 9129428
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||||||||||||||||||||||||||||  |||| | |||||||  |||||| ||| ||||||    
T  9129498 gtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattc 9129428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 9137605 - 9137535
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||||||||||||||||||||||||||||  |||| | |||||||  |||||| ||| ||||||    
T  9137605 gtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattc 9137535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 46672870 - 46672799
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    ||||||||||| ||||||||||||||||||||||||  |||| | |||||||  |||||| ||| |||||||    
T  46672870 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattct 46672799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 21307599 - 21307529
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| |||||||||||| |||||||||||  |||| | ||||||| ||||||| ||| ||||||    
T  21307599 gtgtttggatgggggaatgttttgcgggaatgtaatgttttgagggaattcaaatactttgaggtgaattc 21307529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 35279969 - 35279920
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaatt 204  Q
    ||||||||||| ||||||||||||||||||||||||  |||| |||||||    
T  35279969 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagtgaatt 35279920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 7302351 - 7302386
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    |||||||||||||||||||||||||| |||||||||    
T  7302351 gtgtttggatgagggaatgttttgagagaatgtaat 7302386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 36398056 - 36397997
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatacttt 214  Q
    ||||||||||| |||||||||||||||||||||| |  |||| | ||||||| |||||||    
T  36398056 gtgtttggatgggggaatgttttgagggaatgtattgttttgagggaattcaaatacttt 36397997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 42006020 - 42005985
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  42006020 gtgtttggatgggggaatgttttgagggaatgtaat 42005985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 44436263 - 44436298
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44436263 gtgtttggatgggggaatgttttgagggaatgtaat 44436298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 47767437 - 47767472
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  47767437 gtgtttggatgggggaatgttttgagggaatgtaat 47767472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 49457348 - 49457383
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  49457348 gtgtttggatgggggaatgttttgagggaatgtaat 49457383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 53129910 - 53129875
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    |||||||||||||||||||||| |||||||||||||    
T  53129910 gtgtttggatgagggaatgtttcgagggaatgtaat 53129875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 27252048 - 27251978
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| ||| ||||||||||||||||||||  |||| | |||||||  |||||| ||| ||||||    
T  27252048 gtgtttggatggggggatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattc 27251978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 44692976 - 44692906
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    |||||||||||  |||||||||||||||||||||||  |||| | |||||||  |||||| ||| ||||||    
T  44692976 gtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattc 44692906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 31070415 - 31070482
Alignment:
Q  158 tttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    |||||||| ||||||||||||||||||||||||  |||| | |||||||  |||||| ||| |||||||    
T  31070415 tttggatg-gggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattct 31070482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 34756429 - 34756503
Alignment:
Q  152 agagtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    |||||||||||||| ||||||||||||||||||||||||  |||| | |||||||  |||||| ||| |||||||    
T  34756429 agagtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattct 34756503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 8224773 - 8224808
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  8224773 gtgtttggatgagggaatgttttgagggaatgtaat 8224808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 15034813 - 15034743
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| ||||||||||||||||||||||||  |||| | |||||||  |||||| ||| ||||||    
T  15034813 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattc 15034743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 23536072 - 23536142
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| ||||||||||||||||||||||||  |||| | |||||||  |||||| ||| ||||||    
T  23536072 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattc 23536142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 24273288 - 24273218
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| ||||||||||||||||||||||||  | || | ||||||| ||||||| ||| ||||||    
T  24273288 gtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattc 24273218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 28632653 - 28632584
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    |||||||||||||||||||||| |||||||||||||  |||| | ||||||| ||||||| ||| ||||||    
T  28632653 gtgtttggatgagggaatgtttggagggaatgtaatgttttgagagaattca-atactttgaggtgaattc 28632584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 15034664 - 15034735
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    |||||||||||  |||||||||||||||||||||||  |||| | |||||||  |||||| ||| |||||||    
T  15034664 gtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattct 15034735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 26501147 - 26501088
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatacttt 214  Q
    |||||||||||  |||||||||||||||||||||||  |||| | ||||||| |||||||    
T  26501147 gtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatacttt 26501088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 27804270 - 27804305
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  27804270 gtgtttggatgggggaatgttttgagggaatgtaat 27804305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 30190290 - 30190255
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30190290 gtgtttggatgggggaatgttttgagggaatgtaat 30190255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 37037017 - 37036982
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    |||||||||||||||||||||||||| |||||||||    
T  37037017 gtgtttggatgagggaatgttttgagtgaatgtaat 37036982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 5474422 - 5474458
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaatt 191  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  5474422 gtgtttggatgggggaatgttttgagggaatttaatt 5474458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 28745805 - 28745853
Alignment:
Q  158 tttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattca 206  Q
    |||||||| |||||| ||||||||||||||||| ||||| | |||||||    
T  28745805 tttggatgggggaatattttgagggaatgtaatggtttgagggaattca 28745853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 24044965 - 24045000
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  24044965 gtgtttggatgagggaatgttttgagggaatgtaat 24045000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 3853621 - 3853656
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3853621 gtgtttggatgggggaatgttttgagggaatgtaat 3853656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 3858079 - 3858114
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3858079 gtgtttggatgggggaatgttttgagggaatgtaat 3858114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 26520499 - 26520469
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaat 185  Q
    |||||||||||||||||||||||||||||||    
T  26520499 gtgtttggatgagggaatgttttgagggaat 26520469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 29257429 - 29257396
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  29257429 gtgtttggatgggggaatgttttgagggaatgta 29257396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 44346756 - 44346723
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  44346756 gtgtttggatgggggaatgttttgagggaatgta 44346723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 22766957 - 22767028
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    ||||||||||| ||||||||||||||||||| ||||  |||| | ||||||| ||||||| ||| |||||||    
T  22766957 gtgtttggatgggggaatgttttgagggaatataatgttttgagggaattcaaatactttaaggtgaattct 22767028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 37722959 - 37722889
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| |||||| |||||||||||||||||  |||| | ||||||| ||||||| ||| ||||||    
T  37722959 gtgtttggatgggggaatattttgagggaatgtaatgttttgagggaattcaaatactttgaggtgaattc 37722889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 2721625 - 2721557
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaat 223  Q
    ||||||||||| ||||||||||||||||||||||||  |||| | |||||||  |||||| ||| ||||    
T  2721625 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaat 2721557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 2316383 - 2316418
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2316383 gtgtttggatgggggaatgttttgagggaatgtaat 2316418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 3563282 - 3563353
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    ||||||||||  ||||||||||||||||||||||||  |||| | |||||||  |||||| ||| |||||||    
T  3563282 gtgtttggataggggaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattct 3563353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 9894387 - 9894352
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9894387 gtgtttggatgggggaatgttttgagggaatgtaat 9894352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 15374114 - 15374079
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15374114 gtgtttggatgggggaatgttttgagggaatgtaat 15374079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 20523287 - 20523216
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    ||||||||||| |||||||||||||| |||||||||  |||| | |||||||  |||||| ||| |||||||    
T  20523287 gtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaattcaactactttaaggtgaattct 20523216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 22303935 - 22303900
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22303935 gtgtttggatgggggaatgttttgagggaatgtaat 22303900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 25935355 - 25935320
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25935355 gtgtttggatgggggaatgttttgagggaatgtaat 25935320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 26281334 - 26281263
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    ||||||||||| ||||| ||||||||||||||||||  |||| | |||||||  |||||| ||| |||||||    
T  26281334 gtgtttggatgggggaacgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattct 26281263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 28828372 - 28828407
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  28828372 gtgtttggatgggggaatgttttgagggaatgtaat 28828407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 32389977 - 32390012
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||||||||||||||||| ||||||||||    
T  32389977 gtgtttggatgagggaatgttttgaaggaatgtaat 32390012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 37145564 - 37145497
Alignment:
Q  157 gtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaatt 224  Q
    ||||||||| ||||||||||||||||||||||||  | || | ||||||| ||||||| ||| |||||    
T  37145564 gtttggatgggggaatgttttgagggaatgtaatgttatgagagaattcaaatactttgaggtgaatt 37145497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 40643971 - 40643936
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40643971 gtgtttggatgggggaatgttttgagggaatgtaat 40643936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 190
Target Start/End: Original strand, 13243469 - 13243499
Alignment:
Q  160 tggatgagggaatgttttgagggaatgtaat 190  Q
    |||||||||||||||||||||||||||||||    
T  13243469 tggatgagggaatgttttgagggaatgtaat 13243499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 40090479 - 40090409
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| ||||||||||||||| ||||||||  ||||   ||||||| ||||||| ||| ||||||    
T  40090479 gtgtttggatgggggaatgttttgaggaaatgtaatgttttgatggaattcaaatactttgaggtgaattc 40090409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 15804327 - 15804360
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  15804327 gtgtttggatgggggaatgttttgagggaatgta 15804360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 19533972 - 19533903
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaatt 224  Q
    |||||||||||  |||||||||||||||||||||||  | || | ||||||| ||||||| ||| |||||    
T  19533972 gtgtttggatggaggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaatt 19533903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 28103994 - 28103921
Alignment:
Q  20 aggctagaagaacaaccgagtagcagccgctgcacctcacaattctg-aacaacgctaaaagccacaaagaact 92  Q
    |||||||||||| |||| || | ||||| | |||||||||||||||| ||||| ||||||| ||||| ||||||    
T  28103994 aggctagaagaataaccaagcatcagcctccgcacctcacaattctgaaacaatgctaaaatccacatagaact 28103921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 41762280 - 41762247
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  41762280 gtgtttggatgggggaatgttttgagggaatgta 41762247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 28101235 - 28101163
Alignment:
Q  21 ggctagaagaacaaccgagtagcagccgctgcacctcacaattctg-aacaacgctaaaagccacaaagaact 92  Q
    |||||||||||||||| || ||||||| | | ||||||||||| || |||| |||||||| ||||| ||||||    
T  28101235 ggctagaagaacaaccaagcagcagcctccgtacctcacaattttgaaacatcgctaaaaaccacatagaact 28101163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 15660337 - 15660302
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  15660337 gtgtttggatgagggaatgttttgagggaatgtaat 15660302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 10633037 - 10633106
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaatt 224  Q
    ||||||||||| ||||||||||||||||||||||||  | || | ||||||| ||||||| ||| |||||    
T  10633037 gtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaatt 10633106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 31473854 - 31473923
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaatt 224  Q
    ||||||||||| ||||||||||||||||||||||||  | || | ||||||| ||||||| ||| |||||    
T  31473854 gtgtttggatgggggaatgttttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaatt 31473923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 47108323 - 47108363
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgttt 195  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  47108323 gtgtttggatgagggaatgttttgagggaatttcattgttt 47108363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 7352817 - 7352852
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7352817 gtgtttggatgggggaatgttttgagggaatgtaat 7352852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 36455912 - 36455983
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    ||||||||||| ||||||||||||||||||| ||||  |||| | |||||||  |||||| ||| |||||||    
T  36455912 gtgtttggatgggggaatgttttgagggaatctaatgttttgagggaattcaactactttaaggtgaattct 36455983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 49111466 - 49111431
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  49111466 gtgtttggatgggggaatgttttgagggaatgtaat 49111431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 1539649 - 1539715
Alignment:
Q  158 tttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaatt 224  Q
    ||||||||  |||||||||||||||||||||||  |||| | ||||||| ||||||| ||| |||||    
T  1539649 tttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatactttgaggtgaatt 1539715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 28845875 - 28845911
Alignment:
Q  154 agtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||||  |||||||||||||||||||||||    
T  28845875 agtgtttggatggaggaatgttttgagggaatgtaat 28845911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 17180302 - 17180337
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  17180302 gtgtttggatgagggaatgttttgagggaatgtaat 17180337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 14365705 - 14365775
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| ||||||||||||||||||||||||  |||| | |||||||  |||||| ||| ||||||    
T  14365705 gtgtttggatgggggaatgttttgagggaatgtaatgttttgagggaattcaactactttgaggtgaattc 14365775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 10480124 - 10480159
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10480124 gtgtttggatgggggaatgttttgagggaatgtaat 10480159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 11684604 - 11684639
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  11684604 gtgtttggatgggggaatgttttgagggaatgtaat 11684639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 14537204 - 14537239
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14537204 gtgtttggatgggggaatgttttgagggaatgtaat 14537239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 27033495 - 27033566
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    ||||||||||| |||||||||||||| |||||||||  |||| | |||||||  |||||| ||| |||||||    
T  27033495 gtgtttggatgggggaatgttttgagagaatgtaatgttttgagggaattcaactactttgaggtgaattct 27033566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 41461669 - 41461634
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  41461669 gtgtttggatgggggaatgttttgagggaatgtaat 41461634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 8736491 - 8736461
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaat 185  Q
    |||||||||||||||||||||||||||||||    
T  8736491 gtgtttggatgagggaatgttttgagggaat 8736461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 11532321 - 11532251
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| |||||| ||| |||||||||||||  |||| | ||||||| ||||||| ||| ||||||    
T  11532321 gtgtttggatgggggaatatttggagggaatgtaatgttttgagggaattcaaatactttgaggtgaattc 11532251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 11793900 - 11793970
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| |||||| |||||||||||||||||  | || | ||||||| ||||||| ||| ||||||    
T  11793900 gtgtttggatgggggaatattttgagggaatgtaatgttatgagggaattcaaatactttgaggtgaattc 11793970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 13017784 - 13017854
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattc 225  Q
    ||||||||||| || |||||||||||||||||||||  |||  | ||||||| ||||||| ||| ||||||    
T  13017784 gtgtttggatgtggaaatgttttgagggaatgtaatattttaagggaattcaaatactttgaggtgaattc 13017854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 769041 - 769074
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  769041 gtgtttggatgggggaatgttttgagggaatgta 769074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 1583877 - 1583844
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  1583877 gtgtttggatgggggaatgttttgagggaatgta 1583844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 11141310 - 11141343
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  11141310 gtgtttggatgggggaatgttttgagggaatgta 11141343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 33189325 - 33189292
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgta 188  Q
    ||||||||||| ||||||||||||||||||||||    
T  33189325 gtgtttggatgggggaatgttttgagggaatgta 33189292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 11716550 - 11716518
Alignment:
Q  158 tttggatgagggaatgttttgagggaatgtaat 190  Q
    |||||||| ||||||||||||||||||||||||    
T  11716550 tttggatgggggaatgttttgagggaatgtaat 11716518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 30698289 - 30698321
Alignment:
Q  158 tttggatgagggaatgttttgagggaatgtaat 190  Q
    |||||||| ||||||||||||||||||||||||    
T  30698289 tttggatgggggaatgttttgagggaatgtaat 30698321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 82943 - 83019
Alignment:
Q  150 tcagagtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    |||| ||||||||||| | ||||||||||||||||||||||  |||| | |||||||  |||||| ||| |||||||    
T  82943 tcagtgtgtttggatgggtgaatgttttgagggaatgtaatgttttgagggaattcaactactttaaggtgaattct 83019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 33733437 - 33733473
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaatt 191  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33733437 gtgtttggatgggggaatgttttgagggaatgtaatt 33733473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 9285652 - 9285687
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9285652 gtgtttggatgggggaatgttttgagggaatgtaat 9285687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 34245048 - 34244989
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatacttt 214  Q
    |||||||||||  |||||||||||||||||||||||  |||| | ||||||| |||||||    
T  34245048 gtgtttggatggaggaatgttttgagggaatgtaatgttttgagggaattcaaatacttt 34244989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 559 - 524
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  559 gtgtttggatgggggaatgttttgagggaatgtaat 524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 2034 - 2069
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2034 gtgtttggatgggggaatgttttgagggaatgtaat 2069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 4566 - 4531
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4566 gtgtttggatgagggaatgttttgagggaatataat 4531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 5210 - 5175
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaat 190  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5210 gtgtttggatgagggaatgttttgagggaatataat 5175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 4080 - 4151
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    |||||||||| | ||||||||||||| |||||||||  |||| | ||||||| ||||||| ||| |||||||    
T  4080 gtgtttggataaaggaatgttttgagagaatgtaatgttttgagggaattcaaatactttgaggtgaattct 4151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 56428 - 56357
Alignment:
Q  155 gtgtttggatgagggaatgttttgagggaatgtaattgtttgcgtgaattcacatactttcaggggaattct 226  Q
    |||||||||||||||||| ||||||||||| |||||  |||| | |||||||  |||||| ||| |||||||    
T  56428 gtgtttggatgagggaatattttgagggaaagtaatgttttgagggaattcaactactttaaggtgaattct 56357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 4342 - 4312
Alignment:
Q  122 taaaggtataaattccctcaaaaatccctca 152  Q
    |||||||||||||||||||||||||||||||    
T  4342 taaaggtataaattccctcaaaaatccctca 4312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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