View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2039_high_15 (Length: 246)

Name: NF2039_high_15
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2039_high_15
NF2039_high_15
[»] chr4 (5 HSPs)
chr4 (1-227)||(1601067-1601294)
chr4 (70-112)||(21833641-21833683)
chr4 (70-119)||(571009-571058)
chr4 (70-109)||(53761153-53761192)
chr4 (172-205)||(21833765-21833798)
[»] chr1 (3 HSPs)
chr1 (70-112)||(19467780-19467822)
chr1 (1-112)||(7554874-7554983)
chr1 (161-205)||(19467875-19467919)
[»] chr8 (3 HSPs)
chr8 (70-129)||(21235823-21235882)
chr8 (70-112)||(18314971-18315013)
chr8 (68-112)||(17643282-17643326)
[»] chr7 (1 HSPs)
chr7 (161-207)||(10615273-10615319)
[»] chr5 (3 HSPs)
chr5 (70-112)||(41900804-41900846)
chr5 (171-206)||(28532398-28532433)
chr5 (70-109)||(28532490-28532529)
[»] chr6 (2 HSPs)
chr6 (70-111)||(6588616-6588657)
chr6 (161-206)||(6588699-6588744)
[»] chr3 (2 HSPs)
chr3 (70-102)||(514012-514044)
chr3 (73-112)||(51763736-51763775)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1601294 - 1601067
Alignment:
Q  1 ttaagaacttcaagcatcttgaagaggtcatcatgctcgactgttatggaataaccgatgctgacattgttgcttctgctctccgtgagagaccaacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601294 ttaagaacttcaagcatcttgaagaggtcatcatgctcgactgttatggaataaccgatgctgacattgttgcttctgctctccgtgagagaccaacatt 1601195  T
Q  101 gaggtctttatc-ttttcacctatttttcattcgcaagaatatggaattttgattactaatcatttcattcactcattggtgagtttgaagggtttgact 199  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601194 gaggtctttatccttttcacctatttttcattcgcaagaatatggaattttgattactaatcatttcattcactcattggtgagtttgaagggtttgact 1601095  T
Q  200 tgtcttgaattgtcctattggcgtatct 227  Q
    ||||||||||||||||||||||||||||    
T  1601094 tgtcttgaattgtcctattggcgtatct 1601067  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 21833641 - 21833683
Alignment:
Q  70 ttgcttctgctctccgtgagagaccaacattgaggtctttatc 112  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  21833641 ttgcttcagctctccgtgagagaccaacattgagttctttatc 21833683  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 571058 - 571009
Alignment:
Q  70 ttgcttctgctctccgtgagagaccaacattgaggtctttatcttttcac 119  Q
    ||||||||||||| |||| ||| |||||||||||||||||||| ||||||    
T  571058 ttgcttctgctctacgtgtgaggccaacattgaggtctttatcctttcac 571009  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 53761153 - 53761192
Alignment:
Q  70 ttgcttctgctctccgtgagagaccaacattgaggtcttt 109  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  53761153 ttgcttctgctctccgtgaaagaccaacattgacgtcttt 53761192  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 21833765 - 21833798
Alignment:
Q  172 ctcattggtgagtttgaagggtttgacttgtctt 205  Q
    |||||| |||||||||||||||||||||||||||    
T  21833765 ctcattagtgagtttgaagggtttgacttgtctt 21833798  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 19467780 - 19467822
Alignment:
Q  70 ttgcttctgctctccgtgagagaccaacattgaggtctttatc 112  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  19467780 ttgcttctgctatccgtgagagaccaacattgaggtctttatc 19467822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 7554983 - 7554874
Alignment:
Q  1 ttaagaacttcaagcatcttgaagaggtcatcatgctcgactgttatggaataaccgatgctgacattgttgcttctgctctccgtgagagaccaacatt 100  Q
    ||||||||| ||||| |||  ||||||| |||||| | || ||| |||| |||||| | |||| |||| ||  ||| ||||||| |||||||||||||||    
T  7554983 ttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagctggcattttt--ttcagctctccatgagagaccaacatt 7554886  T
Q  101 gaggtctttatc 112  Q
    ||||||||||||    
T  7554885 gaggtctttatc 7554874  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 19467875 - 19467919
Alignment:
Q  161 catttcattcactcattggtgagtttgaagggtttgacttgtctt 205  Q
    ||||| ||| |||||||| ||||||||||||||||||||| ||||    
T  19467875 cattttattgactcattgctgagtttgaagggtttgacttctctt 19467919  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 21235882 - 21235823
Alignment:
Q  70 ttgcttctgctctccgtgagagaccaacattgaggtctttatcttttcacctatttttca 129  Q
    ||||||||||||| |||| ||| |||||||||||||||||||| ||||||  ||||||||    
T  21235882 ttgcttctgctctacgtgtgaggccaacattgaggtctttatcctttcacaaatttttca 21235823  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 18314971 - 18315013
Alignment:
Q  70 ttgcttctgctctccgtgagagaccaacattgaggtctttatc 112  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  18314971 ttgcttttgctctccgtgagagaccaactttgaggtctttatc 18315013  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 17643282 - 17643326
Alignment:
Q  68 tgttgcttctgctctccgtgagagaccaacattgaggtctttatc 112  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||    
T  17643282 tgttgcttctgctctacgtgagaggccaacgttgaggtctttatc 17643326  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 10615319 - 10615273
Alignment:
Q  161 catttcattcactcattggtgagtttgaagggtttgacttgtcttga 207  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  10615319 cattttattgactcattggtgagtttgaagggcttgacttgtcttga 10615273  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 41900804 - 41900846
Alignment:
Q  70 ttgcttctgctctccgtgagagaccaacattgaggtctttatc 112  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatc 41900846  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 28532433 - 28532398
Alignment:
Q  171 actcattggtgagtttgaagggtttgacttgtcttg 206  Q
    |||||||||||||||| |||||||||||||||||||    
T  28532433 actcattggtgagtttcaagggtttgacttgtcttg 28532398  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 28532529 - 28532490
Alignment:
Q  70 ttgcttctgctctccgtgagagaccaacattgaggtcttt 109  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  28532529 ttgcttctgctctccgtgagagaccgacattgatgtcttt 28532490  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 6588616 - 6588657
Alignment:
Q  70 ttgcttctgctctccgtgagagaccaacattgaggtctttat 111  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  6588616 ttgcttctgctctccgtgagagaccaaaattgacgtctttat 6588657  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 6588699 - 6588744
Alignment:
Q  161 catttcattcactcattggtgagtttgaagggtttgacttgtcttg 206  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||||    
T  6588699 catttaattgactcattggtgagtttgaagagtttgacttgtcttg 6588744  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 514012 - 514044
Alignment:
Q  70 ttgcttctgctctccgtgagagaccaacattga 102  Q
    |||||||||||||||||||||||||||||||||    
T  514012 ttgcttctgctctccgtgagagaccaacattga 514044  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 51763736 - 51763775
Alignment:
Q  73 cttctgctctccgtgagagaccaacattgaggtctttatc 112  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  51763736 cttctgctctccgtgaaagaccaacattgacgtctttatc 51763775  T

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