View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_high_18 (Length: 227)
Name: NF2039_high_18
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_high_18 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 156264 - 156053
Alignment:
| Q |
5 |
gtgtcagtgtcgtgtcatgtatccgtcccaaatcaattcctacacaacacacaaattaaactgaaaatatagaaaaacaaagtcatacctattagcatga |
104 |
Q |
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| T |
156264 |
gtgtcagtgtcgtgtcatgtatccgtcccaaatcaattcctacacaacacacaaattaaagtgaaaatatagaaaaacaaagtcatacctattagcatga |
156165 |
T |
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| Q |
105 |
agcaaagcagcaggaccaagataagactcaggattccaccaataactaggacaagatgtactacaacaagcacacaaaatacactcatacatcccatcaa |
204 |
Q |
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| T |
156164 |
agcaaagcagcaggaccaagataagactcaggattccaccaataactaggacaagaagtactacaacaagcacacaaaatacactcatacatcccatcaa |
156065 |
T |
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| Q |
205 |
gcttagccctat |
216 |
Q |
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|||||||||||| |
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| T |
156064 |
gcttagccctat |
156053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 41504657 - 41504531
Alignment:
| Q |
90 |
tacctattagcatgaagcaaagcagcaggaccaagataagactcaggattccaccaataactaggacaagatgtactacaacaagcacacaaaatacact |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41504657 |
tacctattagcatgaagcaaagcagcaggaccaagataagactcaggattccaccaataactaggacaagaagtactacaacaagcacacaaaatacact |
41504558 |
T |
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| Q |
190 |
catacatcccatcaagcttagccctat |
216 |
Q |
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| T |
41504557 |
catacatcccatcaagcttagccctat |
41504531 |
T |
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