View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_high_2 (Length: 512)
Name: NF2039_high_2
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 501
Target Start/End: Original strand, 29008790 - 29009272
Alignment:
| Q |
19 |
agcccaaacctgcatattggattcaagatcccaggcggaagcaccaccaacggtgtggttaccaccacaaacgcaacggaagagaattgaagccaagacg |
118 |
Q |
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| T |
29008790 |
agcccaatcctgcatattggattcaagatcccaggcggaagcaccaccaacggtgtggttaccaccacaaacgcaacggaagagaatcgaagccaagacg |
29008889 |
T |
|
| Q |
119 |
accacgaacatagctttcactgcccagactggcctcattttcctannnnnnnnnnnnnnnnnnnnnnnncacagagttaactatagcttcgattcaaatt |
218 |
Q |
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| T |
29008890 |
accacgaacatagctttcactgcccagactggcctcattttcctacaaatcaaaccaaaaaatcaaaaacacagagttaactatagcttcgattcaaatt |
29008989 |
T |
|
| Q |
219 |
cttcatctaattgaatgaatataacaccgtaacagtgtcaaatgaaattgaagaattagtttcagtgaaaatagtagcgtgcaaatgcaaattatataga |
318 |
Q |
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| T |
29008990 |
cttcatctaatcgaatgaatacaacaccgtaacagtatcaaatgcaattgaagaattagtttcagtgaaaattgtagcgtgcaaatgcaaattatataga |
29009089 |
T |
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| Q |
319 |
aatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaatttaatcaagaagttgaagcgaacatatatgatctttgcgcggttgaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29009090 |
aatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaatgtaatcaagaagttgaagcgaacctatatgatctttgcgcggttgaag |
29009189 |
T |
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| Q |
419 |
agtttgttatgaattcagaacagagaatttggttatgtacctgcaaattcagaaagtgaaatctcagagcaatgaagaagaag |
501 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29009190 |
agtttgttatgaattcagaacagagaatgtggttatgtacctgcaaattcagaaagtgaaatctcagagcaatgaagaagaag |
29009272 |
T |
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