View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_high_3 (Length: 434)
Name: NF2039_high_3
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 3599266 - 3598849
Alignment:
| Q |
17 |
atcatggaactccttcattttggccgctataagagcagaaatggaaggatcacgtagatcagaagatgacagcgtctgataaattcagaagggaaacatg |
116 |
Q |
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| T |
3599266 |
atcatggaactccttcattttggccgctataagagcagaaatggaaggatcacgtagatcagaagctgacagcgtctgataaattcagaagggaaacatt |
3599167 |
T |
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| Q |
117 |
gaatatatgagcacattgagttcataagtttggtagttcattattnnnnnnnntcaataaatttatgaaccgtaacacttcagggtgaacaattaaaaaa |
216 |
Q |
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| T |
3599166 |
gaatatatgagcacatcgaattcataagtttggtagttcattattaaaaaaaatcaataaatttatgaaccgtaacacttcagggtgaacaattaaaaaa |
3599067 |
T |
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| Q |
217 |
tgcctaaatttgaagtgatactagttttataatgaatccattttatggtttttaatcattaatcaaacataataattttctaaaagttggtttgagtgct |
316 |
Q |
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| T |
3599066 |
tgcctaaatttgaagtgatactagttttataatgaatccattttatggtttttaatcattaatcaaacataataattttctaaaagttggtttgagtgct |
3598967 |
T |
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| Q |
317 |
atactacagaactaagattaaaaataaaaggtgtgagattacccgtgcatggataaactcttcaacacgtccatttgtaaaacgtccaagcagacgtggt |
416 |
Q |
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| T |
3598966 |
atactacagaactaagattaaaaataaaaagtgtgagattacccgtgcatggataaactcttcaacacgtccatttgtaaaacgtcctagtagacgtggt |
3598867 |
T |
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| Q |
417 |
ccctgaccattctttgac |
434 |
Q |
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| T |
3598866 |
ccctgaccattctttgac |
3598849 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 15546361 - 15546411
Alignment:
| Q |
17 |
atcatggaactccttcattttggccgctataagagcagaaatggaaggatc |
67 |
Q |
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| T |
15546361 |
atcatggaactccttcattttggaggctataagagcagaaatagatggatc |
15546411 |
T |
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