View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_high_6 (Length: 345)
Name: NF2039_high_6
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 28706546 - 28706237
Alignment:
| Q |
19 |
catcttatgcccataaagaatatcatatgcgcaagcctcttatgccacaacttcgtcatatcttcttggtcaatcttggaggaagcaacagcagcagaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28706546 |
catcttatgcccataaagaatatcatatgcgcaagcctcttatgccacaacttcgtcatatcttcttggtcaatcttggaggaagcaacagcagcagaat |
28706447 |
T |
|
| Q |
119 |
cagttagtgtcgtaccttgtagaaagtatagagtaccccgcttcacaccttttctgaatcacacttgaacccttgcaaacatgtataactccagcttcac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28706446 |
cagttagtgtcgtaccttgtagaaagtatagagtaccccgcttcacaccttttctgaatcacacttgaacccttgcaaacatgtataactccagcttcac |
28706347 |
T |
|
| Q |
219 |
ctttgaaactaaaccccttcttgtccaaaagactcaaagatatcagattcttcgtcatgtgtggaacatgtctaacttcgttcggtgtacataatttacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28706346 |
ctttgaaactaaaccccttcttgtccaaaagactcaaaaatatcagattcttcgtcatgtgtggaacatgtctaacttcgttcggtgtacataatttacc |
28706247 |
T |
|
| Q |
319 |
atcataagtc |
328 |
Q |
| |
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||||| |||| |
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| T |
28706246 |
atcatgagtc |
28706237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 41 - 320
Target Start/End: Original strand, 13417487 - 13417767
Alignment:
| Q |
41 |
tcatatgcgcaagcctcttatgccacaacttcgtcatatcttcttggtcaatcttggaggaagcaacagcagcagaatcagttagtgtcgtaccttgtag |
140 |
Q |
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|||||||| |||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||| || | || ||| |||||| ||||||||||| |
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| T |
13417487 |
tcatatgcccaagcctcatatgccacaacctcgtcatatctttatggtcaatctcggaggaagcaacaacaacttaagcagatagtgtagtaccttgtag |
13417586 |
T |
|
| Q |
141 |
aaagtatagagtaccccgcttcacaccttttctgaatcacacttgaacccttgcaaacatgtataactc--cagcttcacctttgaaactaaaccccttc |
238 |
Q |
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|||||| ||||||| || ||||||||||| | |||||| ||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |
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| T |
13417587 |
aaagtagagagtacatcgtttcacaccttt-caaaatcacggttgaacccttgcaaacatgtataactctccaccttcacttttgaaactaaaccccttc |
13417685 |
T |
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| Q |
239 |
ttgtccaaaagactcaaagatatcagattcttcgtcatgtgtggaacatgtctaacttcgttcggtgtacataatttaccat |
320 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
13417686 |
ttgtccaaaagactcagagatatctgattcttcgtcatgtgtggaacaggtctaacttcgttaagtgtacaaaatttaccat |
13417767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 139 - 337
Target Start/End: Complemental strand, 30047636 - 30047439
Alignment:
| Q |
139 |
agaaagtatagagtaccccgcttcacaccttttctgaatcacacttgaacccttgcaaacatgtataactccagcttcacctttgaaactaaaccccttc |
238 |
Q |
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||||||||||||||||| ||||||||| |||| | |||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |||| |
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| T |
30047636 |
agaaagtatagagtacctcgcttcacaacttt-caaaatcacacttgaacccttgcaagcatatataactccaccttcacctttgaaactaaacctcttc |
30047538 |
T |
|
| Q |
239 |
ttgtccaaaagactcaaagatatcagattcttcgtcatgtgtggaacatgtctaacttcgttcggtgtacataatttaccatcataagtcatattcttc |
337 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||| || ||||| |
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| T |
30047537 |
ttgtccaaaagactcagagatatctgattcttcgtcatgtgtggaacatgtctaacttctttcagtgtacaaaatttaccatcatgagtcctaatcttc |
30047439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 30047715 - 30047648
Alignment:
| Q |
41 |
tcatatgcgcaagcctcttatgccacaacttcgtcatatcttcttggtcaatcttggaggaagcaaca |
108 |
Q |
| |
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||||||| |||||||| |||||||||||||| |||| ||||||| |||||||| ||||||||||||| |
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| T |
30047715 |
tcatatgtccaagcctcatatgccacaacttcttcatttcttcttagtcaatctcggaggaagcaaca |
30047648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 27367630 - 27367692
Alignment:
| Q |
59 |
tatgccacaacttcgtcatatcttcttggtcaatcttggaggaagcaacagcagcagaatcag |
121 |
Q |
| |
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|||||||||| || |||||||||||||||||||| | ||||||||||||| || ||||||||| |
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| T |
27367630 |
tatgccacaattttgtcatatcttcttggtcaatttcggaggaagcaacaacaacagaatcag |
27367692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 40 - 328
Target Start/End: Original strand, 9008944 - 9009235
Alignment:
| Q |
40 |
atcatatgcgcaagcctcttatgccacaacttcgtcatatcttcttggtcaatcttggaggaagcaacagcagcagaatcagttagtgtcgtaccttgta |
139 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||| |||||| | | |||||| ||||||| || |||||| |||||| ||||||||| |
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| T |
9008944 |
atcatatgcccaagcctcatatgccacaacttcgtcatatcttcttagtcaatatcgaaggaagaaacagcaacataatcagatagtgtaataccttgta |
9009043 |
T |
|
| Q |
140 |
gaaagtatagagtaccccgcttcacaccttttctgaatcacacttgaacccttgcaaacatgtataactccagcttcacctttgaaactaaaccccttct |
239 |
Q |
| |
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|||| || |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||| |
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| T |
9009044 |
gaaattaaagagtacctcgcttctcacctttta-gaatcacacttgaacccttgcaaacatgtataactccatcttcacctttcaaactgaaccctgtct |
9009142 |
T |
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| Q |
240 |
tgtccaaaagactcaaagatatcagattcttcgtcatgtgtggaa----catgtctaacttcgttcggtgtacataatttaccatcataagtc |
328 |
Q |
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|||||||||||||| ||||||||||||||| | |||||||| || ||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
9009143 |
tgtccaaaagactcggagatatcagattcttggacatgtgtgaaacatgcatgtctaacttcgttcagtgtacataatttaccatcatgagtc |
9009235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 53471176 - 53471305
Alignment:
| Q |
41 |
tcatatgcgcaagcctcttatgccacaacttcgtcatatcttcttggtcaatcttggaggaagcaacagcagcagaatcagttagtgtcgtaccttgtag |
140 |
Q |
| |
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|||||||| |||||||| |||||||||| ||||||||||||||||||||||||| | ||||||||||| || || |||||||||| || ||||||||||| |
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| T |
53471176 |
tcatatgcccaagcctcatatgccacaatttcgtcatatcttcttggtcaatctcgaaggaagcaacaacaccataatcagttagcgtagtaccttgtag |
53471275 |
T |
|
| Q |
141 |
aaagtatagagtaccccgcttcacaccttt |
170 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |
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| T |
53471276 |
aaagtacagagtacccctcttcacaccttt |
53471305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 53471315 - 53471375
Alignment:
| Q |
261 |
tcagattcttcgtcatgtgtggaacatgtctaacttcgttcggtgtacataatttaccatca |
322 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||| |
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| T |
53471315 |
tcagattct-cgtcatgtgtggaacaagtctaactttgttcaatgtacataatttaccatca |
53471375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 41 - 323
Target Start/End: Complemental strand, 24274167 - 24273886
Alignment:
| Q |
41 |
tcatatgcgcaagcctcttatgccacaacttcgtcatatcttcttggtcaatcttggaggaagcaacagcagcagaatcagttagtgtcgtaccttgtag |
140 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || || ||||| || || |||||||||| |
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| T |
24274167 |
tcatatgcccaagcctcatatgccacaacttcgtcatatcttcttggtcaatctcagaggaagcaacaacaacaatatcagataacgtagtaccttgtaa |
24274068 |
T |
|
| Q |
141 |
aaagtatagagtaccccgcttcacaccttttctgaatcacacttgaacccttgcaaacatgtataactccagcttcacctttgaaactaaaccccttctt |
240 |
Q |
| |
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|||||| | ||||| | ||||||||||||| | |||||||||||||||||||| ||| ||||||| ||||| |||||| ||| ||||||||||||||||| |
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| T |
24274067 |
aaagtacaaagtactctgcttcacaccttt-cagaatcacacttgaacccttgaaaatatgtatagctccaccttcacttttaaaactaaaccccttctt |
24273969 |
T |
|
| Q |
241 |
gtccaaaagactcaaagatatcagattcttcgtcatgtgtggaacatgtctaacttcgttcggtgtacataatttaccatcat |
323 |
Q |
| |
|
||||| ||||||||||||||| | ||| ||||| | |||||||||||||||||| | ||| |||||||||||||||||||| |
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| T |
24273968 |
gtccagaagactcaaagatataatattattcgttacgtgtggaacatgtctaacattgtttaatgtacataatttaccatcat |
24273886 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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