View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_high_7 (Length: 312)
Name: NF2039_high_7
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 54988372 - 54988090
Alignment:
| Q |
13 |
aatataatgtccgaaactatactatacataaacacttggaaataaataggatgtgcagacaattagatattatgatgtgtaccagataccgatgatattg |
112 |
Q |
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| T |
54988372 |
aatataatgtccgaaactatactatacataaacacttggaaataaataggatgtgcagacaattagatattatgatgtgtaccagataccgatgatattg |
54988273 |
T |
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| Q |
113 |
atcaacagtaacatcgccgttacttccatcatgagtactacctgcaaaatatatatggtattgaattaaagtattcaagtatgaaaaattgatatctaga |
212 |
Q |
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| T |
54988272 |
atcaacagtaacatcaccgttacttccatcatgagtactacctgcaaaatatatatggtattgaattaaagtattcaagtatgaaaaattgatatctaga |
54988173 |
T |
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| Q |
213 |
agacactgaaatgttgttatcatgacctggtttatgagtgaagacatcccagtcgctcaaacctttgccatcactcaagtaag |
295 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
54988172 |
agacacggaaatgttgttatcatgacctggtttatgagtgaagacatcccagttgctcaaacctttgccatcactcaagtaag |
54988090 |
T |
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