View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_low_10 (Length: 293)
Name: NF2039_low_10
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 5663378 - 5663124
Alignment:
| Q |
20 |
cacatgattctcataagcagtttatagtaacatgttagcaatatcagcatagaagaaaactattataacaacagtagtataataacaggaggaagatgaa |
119 |
Q |
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| T |
5663378 |
cacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataac---agaaagatgaa |
5663282 |
T |
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| Q |
120 |
gaagttataacccaaggcagcagaacataactactggctcgtgagtacc-aaattgacaggaaatggaggagaacgtgaagctaa--tgtctttaactac |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||| | |
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| T |
5663281 |
gaagttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttc |
5663182 |
T |
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| Q |
217 |
ttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagata |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663181 |
ttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagata |
5663124 |
T |
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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 131 - 266
Target Start/End: Complemental strand, 52131504 - 52131371
Alignment:
| Q |
131 |
ccaaggcagcagaacataactactggctcgtgagtaccaaattgacaggaaatggaggagaacgtgaagcta-atg-tctttaactacttgtgagaagcg |
228 |
Q |
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| T |
52131504 |
ccaaggcagcagaacataact----tctcgtgagtaccaaattgacaggaaatggaggataacgtgacgctacatgttctttgacttcttgtgagaagcg |
52131409 |
T |
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| Q |
229 |
accatggtcttaccggtgacagaagcttcgaagtcgga |
266 |
Q |
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| T |
52131408 |
accatggtcttaccgatgacagaagcttcgaaatcgga |
52131371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 11649155 - 11649210
Alignment:
| Q |
219 |
gtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagata |
274 |
Q |
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| T |
11649155 |
gtgagaagcgaccatggtcttaccgatgacagaagcttcgaagtcggagcgagata |
11649210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 22007884 - 22007768
Alignment:
| Q |
164 |
gtaccaaattgacaggaaatggaggagaa----cgtgaagcta-atgt-ctttaactacttgtgagaagcgaccatggtcttaccggtgacagaagcttc |
257 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||| |||||||||||||||| || ||||||||| || |
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| T |
22007884 |
gtaccaaattgacaggaaatggaggagaatcaacgtgaagctacatgttctttaacttcttgtgaaaagcgaccatggtcttgacgatgacagaagtttt |
22007785 |
T |
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| Q |
258 |
gaagtcggagcgagata |
274 |
Q |
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||||||| ||||||||| |
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| T |
22007784 |
gaagtcgaagcgagata |
22007768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 11649126 - 11649159
Alignment:
| Q |
131 |
ccaaggcagcagaacataactactggctcgtgag |
164 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
11649126 |
ccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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