View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_low_15 (Length: 256)
Name: NF2039_low_15
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 5663378 - 5663159
Alignment:
| Q |
20 |
cacatgattctcataagcagtttatagtaacatgttagcaatatcagcatagaagaaaactattataacaacagtagtataataacataaagatgaagaa |
119 |
Q |
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| T |
5663378 |
cacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacagaaagatgaagaa |
5663279 |
T |
|
| Q |
120 |
gttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttcttg |
219 |
Q |
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| T |
5663278 |
gttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttcttg |
5663179 |
T |
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| Q |
220 |
tgagaagcgaccatggtctt |
239 |
Q |
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|||||||||||||||||||| |
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| T |
5663178 |
tgagaagcgaccatggtctt |
5663159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 52131508 - 52131398
Alignment:
| Q |
124 |
taaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagcta-atgtgtctttaacttcttgtga |
222 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| || |||| |||| |||| ||||| ||||||||||| |
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| T |
52131508 |
taaaccaaggcagcagaacataact----tctcgtgagtacc-aaattgacaggaaatggaggataacgtgacgctacatgt-tctttgacttcttgtga |
52131415 |
T |
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| Q |
223 |
gaagcgaccatggtctt |
239 |
Q |
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| T |
52131414 |
gaagcgaccatggtctt |
52131398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 22007875 - 22007796
Alignment:
| Q |
171 |
tgacaggaaatggaggagaat----gtgaagcta-atgtgtctttaacttcttgtgagaagcgaccatggtcttgatgatg |
246 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||| |
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| T |
22007875 |
tgacaggaaatggaggagaatcaacgtgaagctacatgt-tctttaacttcttgtgaaaagcgaccatggtcttgacgatg |
22007796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 11649122 - 11649159
Alignment:
| Q |
124 |
taaaccaaggcagcagaacataactactggctcgtgag |
161 |
Q |
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| T |
11649122 |
taaaccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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