View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_low_16 (Length: 250)
Name: NF2039_low_16
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 3598865 - 3598621
Alignment:
| Q |
1 |
cctgaccattctttgacatgtactcaaatgtccgtatttcatcatccctatcaaagaaaatttccacaccctccccgtagatcctaacaagaacttttcg |
100 |
Q |
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| T |
3598865 |
cctgaccattctttgacatgtactcaaatgtccgtatttcatcatccctatcaaagaaaatttccacaccctccccgtagatcctaacaagaacttttcg |
3598766 |
T |
|
| Q |
101 |
tgaggtttcctcagttgtagctggccactttatttcaaatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtaca |
200 |
Q |
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| T |
3598765 |
tgaggtttcctcagttgtagctggccactttatttcaaatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtaca |
3598666 |
T |
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| Q |
201 |
tcctcccatttacctgctaatgatatcagaatctcctttgcttct |
245 |
Q |
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| T |
3598665 |
tcctcccatttacctgctaatgatatcagaatctcctttgcttct |
3598621 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 15547298 - 15547404
Alignment:
| Q |
138 |
aatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcccatttacctgctaatgatatcagaatctcct |
237 |
Q |
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||||||||||| ||||||||||| || ||||| || || | ||| |||||||||| | ||||| ||||||||| |||||||||| ||| ||||| | |
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| T |
15547298 |
aatacctcattggtcattgcccctttaagaggaataacttccaactcatttgcatccaatacattttcccatttatttgctaatgatttcaatatctctt |
15547397 |
T |
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| Q |
238 |
ttgcttc |
244 |
Q |
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||||||| |
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| T |
15547398 |
ttgcttc |
15547404 |
T |
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