View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_low_19 (Length: 236)
Name: NF2039_low_19
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_low_19 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 20779 - 20570
Alignment:
| Q |
12 |
tgcttaagtctttgcaactttgttcttagttataacatgcctccattttttgcaatgccctagatgaatagaggagtgtgaaatatttataaatcaccat |
111 |
Q |
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| T |
20779 |
tgcttaagtctttgcaactttgttcttagttataacatgcctccattttttgcaatgccctagatgaatagaggagtgtgaaatatctataaatcaccat |
20680 |
T |
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| Q |
112 |
taccctcaatttccactagtaaattctaagcggttaaaaagtttgccggccctaatgtgtaacttaggtcctcttacacaaccgacgtcaatgtctcgac |
211 |
Q |
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| T |
20679 |
taccctcaatttccactagtaaattctaagcggttaaaaagtttgccggccctaatgtgtaacttaggtcctcttacacaaccgacgccaatgtctcgac |
20580 |
T |
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| Q |
212 |
tcaagtcatt |
221 |
Q |
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|||||||||| |
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| T |
20579 |
tcaagtcatt |
20570 |
T |
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