View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_low_2 (Length: 696)
Name: NF2039_low_2
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 43070781 - 43071039
Alignment:
| Q |
1 |
aaggtgtgtaaataggtttatcacctacattagatgcaacaaaacaatcaacaacaacttacggatatagataaccaaaatttgagttaggtcctccttg |
100 |
Q |
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| T |
43070781 |
aaggtgtgtaaataggtttatcatctacattagatgcaacaaaacaatcaaccacaacttacggatatagataaccaaaatttaagttaggtcctccttg |
43070880 |
T |
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| Q |
101 |
aatctaaaatttgataacacagactgaccgttttgtcgatggttagat-aacttcattcgtcatgttgacgtaaatattatag-aataagacatacaact |
198 |
Q |
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| T |
43070881 |
aatctaaaatttgataatacagaatgaccgttttatcgatggttaaataaacttcatttgtcatgctgatgtaaatattatagaaataagacatacaact |
43070980 |
T |
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| Q |
199 |
tttatgttattatctagtagtgtgcaagaattgaaggttgctttgagtataggaagaaa |
257 |
Q |
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| T |
43070981 |
tttatgttattatctagtagtgtgcaagaattgaaggttgctttgagtataggaagaaa |
43071039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 352 - 545
Target Start/End: Original strand, 43071121 - 43071311
Alignment:
| Q |
352 |
ggaaccattatataaattttgttagatattgagaactgtaaatagtactttgaactattttcatcattagatcnnnnnnnnnnnnnnnnnnnnntcttcc |
451 |
Q |
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| T |
43071121 |
ggaaccattatataaattttgttagagattgagaactgtaaatagtactttgaactattttcatcattagatcaataataataataataat---tcttcc |
43071217 |
T |
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| Q |
452 |
caagttagttctttcttaggtttctattatggattctagaactttcttcatcatcaattcaccatgttcaacaactttttaatgatatcagagt |
545 |
Q |
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| T |
43071218 |
caagttagttctttcttagatttctattatggattctagaactttcttcatcatcaattcaccatgttcaacaactttttaatgatatcagagt |
43071311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 622 - 696
Target Start/End: Original strand, 43071546 - 43071620
Alignment:
| Q |
622 |
aagtaatataaatctagacagaaaggataattaattaatactaatactaatgatacaagtaatcgaaatctagat |
696 |
Q |
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| T |
43071546 |
aagtaatataaatctagatagaaaggataattaattaatactaatactaatgatacaagtaatctaaatctagat |
43071620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 546 - 621
Target Start/End: Original strand, 43071341 - 43071420
Alignment:
| Q |
546 |
gagccacatagagttgacggtgtgca----cacaccctgaaatttaaaaaattatatttaaccccctaacttaattcttt |
621 |
Q |
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| T |
43071341 |
gagccacatagagttgacggtgtgcatgtgcacaccctgaaatttaaaaaattatatttaaccccctaacttaattcttt |
43071420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 664
Target Start/End: Original strand, 43071602 - 43071644
Alignment:
| Q |
622 |
aagtaatataaatctagacagaaaggataattaattaatacta |
664 |
Q |
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| T |
43071602 |
aagtaatctaaatctagatagaaaggataattaattaatacta |
43071644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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