View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_low_20 (Length: 230)
Name: NF2039_low_20
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 7571511 - 7571722
Alignment:
| Q |
19 |
gagggaacaacgtatgatgttcaggttactatgccgggttcacctattcttgcacctcccggattttatctactatttgtggttcataaagaaattccta |
118 |
Q |
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| T |
7571511 |
gagggaacaacgtatgatgttcaggttactatgccgggttcacctattcttgcgcctcctggattttatctactatttgtggttcataaagaaattccta |
7571610 |
T |
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| Q |
119 |
gtgaaggaatttggatacaaatactttaattttcaaatgcaactgtgtggtaaataataaatttgcttttatattatcaaagaaagtttgtttattaccc |
218 |
Q |
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| T |
7571611 |
gtgaaggaatttggatacaaatactttaattttcaaatgcaactgtgtggtaaataataaatttgcttttatattatcaaagaaagtttgtttattaccc |
7571710 |
T |
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| Q |
219 |
tctctaatctct |
230 |
Q |
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|||||||||||| |
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| T |
7571711 |
tctctaatctct |
7571722 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 531720 - 531815
Alignment:
| Q |
57 |
ttcacctattcttgcacctcccggattttatctactatttgtggttcataaagaaattcctagtgaaggaatttggatacaaatactttaattttc |
152 |
Q |
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| T |
531720 |
ttcacctattcttgcacctccaggtttttatctactatttgtggtaaacgcacaaattcctagcgagggtatttgggtacatatactttgattttc |
531815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 52914701 - 52914798
Alignment:
| Q |
57 |
ttcacctattcttgcacctcccggattttatctactatttgtggttcataaagaaattcctagtgaaggaatttggatacaaatactttaattttcaa |
154 |
Q |
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|||||| |||||||||||||| |||| |||| ||||||||||||| ||| ||||| |||| ||| | || ||||| | ||| |||| |||||||||| |
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| T |
52914701 |
ttcacccattcttgcacctccgggatattatttactatttgtggtccatcaagaagttccaagtcagggtgtttgggtccaactactctaattttcaa |
52914798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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