View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2039_low_6 (Length: 376)
Name: NF2039_low_6
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_low_6 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 176201 - 175848
Alignment:
| Q |
1 |
aatgtgccatgaccatgaagagtggtcatctggatcttgtgattttaggaatcggttattttgatcttcaatggcccaatgaacgctgccacttacaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176201 |
aatgtgccatgaccatgaagagtggtcatctggatcttgtgattttaggaatcggttattttgatcttcaatggcccaatgaacgctgccacttacaaat |
176102 |
T |
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| Q |
101 |
ttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttt |
200 |
Q |
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| T |
176101 |
ttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgaaccttaacttgagttt |
176002 |
T |
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| Q |
201 |
tgtaaatttcattttgaaatattccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcatacccaatggtgtatgc |
300 |
Q |
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| T |
176001 |
tgtaaacatcattttga---attccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcatacccaatggtgtatgc |
175905 |
T |
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| Q |
301 |
aatttgtagacttttctcgaaatccaaagagggcaatatattgaatttggtggtaca |
357 |
Q |
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| T |
175904 |
aatttgtagacttttctcgaaatccaaagagggcaatatattgaatttggtggtaca |
175848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 56 - 202
Target Start/End: Original strand, 7564960 - 7565106
Alignment:
| Q |
56 |
ttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatcc |
155 |
Q |
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| T |
7564960 |
ttatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctggaatcc |
7565059 |
T |
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| Q |
156 |
ttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
202 |
Q |
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| T |
7565060 |
ttctccaaacattgctacctaaagtatgaaccttaacttgagttttg |
7565106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 1471188 - 1471278
Alignment:
| Q |
112 |
cccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
202 |
Q |
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| T |
1471188 |
cccttcgggttgacccatgagctgagaagggaagtcttgaatcgttctccaaaaattgttacctaaagtatgaaccttaactagagttttg |
1471278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 55419619 - 55419478
Alignment:
| Q |
61 |
ttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctc |
160 |
Q |
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| T |
55419619 |
ttgatcttctatggcccaattaatggtgccacttacaaatttccccggacactcttcgggcaaacccgtgatttcagaagggaagtctggtatccttttc |
55419520 |
T |
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| Q |
161 |
caagagttggtgcctaaagtgtgagccttaacttgagttttg |
202 |
Q |
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| T |
55419519 |
caaaagttggtacctaaagtatgagccctaacttgagttttg |
55419478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 3926898 - 3926760
Alignment:
| Q |
59 |
ttttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttc |
158 |
Q |
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| T |
3926898 |
ttttgattttctatggcccaattaattgtgccacttacaaatttcccaacatacccattgggtaaacccatgatatttgaagggaagtttggaatcctcc |
3926799 |
T |
|
| Q |
159 |
tccaagagttggtgcctaaagtgtgagccttaacttgag |
197 |
Q |
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| T |
3926798 |
tccaaaaattggtacctagagtatgaaccctaacttgag |
3926760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 1421453 - 1421520
Alignment:
| Q |
137 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaa |
205 |
Q |
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| T |
1421453 |
gaagggaagtccttaatccttctccaagagttggtgcc-aaagtatgaacttcaacttgagttttgtaa |
1421520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 40659 - 40724
Alignment:
| Q |
137 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
202 |
Q |
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| T |
40659 |
gaagggaagtcttcaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttg |
40724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 24233688 - 24233753
Alignment:
| Q |
137 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
202 |
Q |
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| T |
24233688 |
gaagggaagtccttaatccttctccaagagtcggtacctaatgtatgaactttaacttgagttttg |
24233753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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