View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2039_low_7 (Length: 364)
Name: NF2039_low_7
Description: NF2039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2039_low_7 |
 | |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 28706248 - 28705892
Alignment:
| Q |
1 |
ccatcataagtcataatcttggtagatcccatcccaaccaccttgtaggaagaactattggccataacaatattgccaccatccaatttctcataggttg |
100 |
Q |
| |
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||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28706248 |
ccatcatgagtcgtaatcttgatagatcccatcccaaccaccttgtaggaagaactattggccataacaatattgccaccatccaatttctcataggttg |
28706149 |
T |
|
| Q |
101 |
aaaatcattctctcctagaacaaatatgataagatgctccggaatctagaacgcacattgcttggatcaatctcaatatgtttagaagattttaaagaaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28706148 |
aaaatcattctctcctaggacaaatatgataagatgctccggaatctagaacgcacattgctttgatcaatctcaatatgtttagaagattttaaagaaa |
28706049 |
T |
|
| Q |
201 |
tataatcacattggttgtaaacttgtgtgtgcaccttatgattcaagtgtaaaactctttaagaacattggtgaaattgtaagacaatttgaatattcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28706048 |
tataatcacattggttgtaaacttgtgtgtgcaccttatgattcaagtgtaaaactctttaagaacattggtgaaattgtaagacaatttgaatattcaa |
28705949 |
T |
|
| Q |
301 |
gcatctttgaaagcctcagatatggtatcgactgtaccagacccgtcatttcctatg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
28705948 |
gcatctttgaaagcctcagatatggtatcgattgtaccagacccgtcatttcctatg |
28705892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 30047459 - 30047302
Alignment:
| Q |
1 |
ccatcataagtcataatcttggtagatcccatcccaaccaccttgtaggaagaactattggccataacaatattgccaccatccaatttctcataggttg |
100 |
Q |
| |
|
||||||| |||| ||||||| |||||| |||||||||||||||| || |||||||| ||||||| ||||||| ||||||||||| | |||||||| || |
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|
| T |
30047459 |
ccatcatgagtcctaatcttcatagatcacatcccaaccaccttgcagacagaactatgggccatatcaatatttccaccatccaactgctcataggatg |
30047360 |
T |
|
| Q |
101 |
aaaatcattctctcctagaacaaatatgataagatgctccggaatctagaacgcacat |
158 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
30047359 |
aaaaccattatctcctaggacaaatatgataagacgctccggaatctagaacccacat |
30047302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 13417772 - 13417915
Alignment:
| Q |
9 |
agtcataatcttggtagatcccatcccaaccaccttgtaggaagaactattggccataacaatattgccaccatccaatttctcataggttgaaaatcat |
108 |
Q |
| |
|
|||| |||| ||| |||| |||||||||||||||||| | | |||||||||||||||||||||||| |||||| ||||||||||||| |||||| || |
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|
| T |
13417772 |
agtcctaattttgatagagcccatcccaaccaccttgctgacataactattggccataacaatattgcaaccatctaatttctcataggatgaaaacaat |
13417871 |
T |
|
| Q |
109 |
tctctcctagaacaaatatgataagatgctccggaatctagaac |
152 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| ||||||||||||| |
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|
| T |
13417872 |
tctctcctaggacaaatatgataagacgcttcggaatctagaac |
13417915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 43556230 - 43556141
Alignment:
| Q |
165 |
gatcaatctcaatatgtttagaagattttaaagaaatataatcacattggttgtaaacttgtgtgtgcaccttatgattcaagtgtaaaa |
254 |
Q |
| |
|
||||||||||| |||||| ||||||| ||| |||||||||| || ||| |||||||| | | ||| || |||||||||||||||||||| |
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|
| T |
43556230 |
gatcaatctcactatgttgagaagatattacggaaatataattactttgattgtaaacatctttgtccatcttatgattcaagtgtaaaa |
43556141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 27603163 - 27603269
Alignment:
| Q |
161 |
cttggatcaatctcaatatgtttagaagattttaaagaaatataatcacattggttgtaaacttgtgtgtgcaccttatgattcaagtgtaaaactcttt |
260 |
Q |
| |
|
||||||||||||||| || || | ||||| |||| |||||||||| | ||| ||||||| || | || |||||||||| ||||||||||||||||| |
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|
| T |
27603163 |
cttggatcaatctcactacattgaaaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatccaagtgtaaaactcttt |
27603262 |
T |
|
| Q |
261 |
aagaaca |
267 |
Q |
| |
|
||||||| |
|
|
| T |
27603263 |
aagaaca |
27603269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 53471412 - 53471523
Alignment:
| Q |
46 |
taggaagaactattggccataacaatattgccaccatccaatttctcataggttgaaaatcattctctcctagaacaaatatgataagatgctccggaat |
145 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
53471412 |
taggcagaactagcggccataacaatattgccaccatccaattgctcataggttaaaaaccattctcccctaggacaaatatgataagatgctccggaat |
53471511 |
T |
|
| Q |
146 |
ctagaacgcaca |
157 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
53471512 |
ccagaacccaca |
53471523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 9009224 - 9009369
Alignment:
| Q |
1 |
ccatcataagtcataatcttggtagatcccatcccaaccaccttgtaggaagaactattggccataacaatattgccaccatccaatttctcataggttg |
100 |
Q |
| |
|
||||||| |||| |||||||| |||| ||||||||||||| |||| | |||||| |||| |||| ||||||||||||||||||| | |||||| | || |
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|
| T |
9009224 |
ccatcatgagtcctaatcttgatagagcccatcccaaccatcttgcaaacagaactgttggtcatagcaatattgccaccatccaactactcatatgatg |
9009323 |
T |
|
| Q |
101 |
aaaatcattctctcctagaacaaatatgataagatgctccggaatc |
146 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||| ||||| |
|
|
| T |
9009324 |
aaaatcattctctcctaggacgaatatgataagattctccagaatc |
9009369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 24273840 - 24273736
Alignment:
| Q |
53 |
aactattggccataacaatattgccaccatccaatttctcataggttgaaaatcattctctcctagaacaaatatgataagatgctccggaatctagaac |
152 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |||| |||||||||||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
24273840 |
aactattggctataacaatattaccaccattgaattgctcataggttgaaagccattctctcgtaggacaaatatgataagacactctggaatctagaac |
24273741 |
T |
|
| Q |
153 |
gcaca |
157 |
Q |
| |
|
|||| |
|
|
| T |
24273740 |
ccaca |
24273736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 17286159 - 17286263
Alignment:
| Q |
161 |
cttggatcaatctcaatatgtttagaagattttaaagaaatataatcacattggttgtaaacttgtgtgtgcaccttatgattcaagtgtaaaactcttt |
260 |
Q |
| |
|
||||||||| ||||| |||||| | ||||||||||||||||||||| | ||| |||||||| || | ||||||||||| ||||||||||||| ||| |
|
|
| T |
17286159 |
cttggatcagtctcactatgttgaaaagattttaaagaaatataattattttgattgtaaacctgcaagcacaccttatgatccaagtgtaaaacttttt |
17286258 |
T |
|
| Q |
261 |
aagaa |
265 |
Q |
| |
|
||||| |
|
|
| T |
17286259 |
aagaa |
17286263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 10489849 - 10489740
Alignment:
| Q |
161 |
cttggatcaatctcaatatgtttagaagattttaaagaaatataatcacattggttgtaaacttgtgtgtgcaccttatgattcaagtgtaaaactcttt |
260 |
Q |
| |
|
||||||||||||||| || ||| ||||||| ||| |||||||||| | ||| |||||||| || | ||||||||||| ||||||||||| ||| |
|
|
| T |
10489849 |
cttggatcaatctcactacgttgagaagatcttacggaaatataattattttgattgtaaacctgcaagcacaccttatgatccaagtgtaaaaaatttt |
10489750 |
T |
|
| Q |
261 |
aagaacattg |
270 |
Q |
| |
|
|||||||||| |
|
|
| T |
10489749 |
aagaacattg |
10489740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 15235335 - 15235228
Alignment:
| Q |
162 |
ttggatcaatctcaatatgtttagaagattttaaagaaatataatcacattggttgtaaacttgtgtgtgcaccttatgattcaagtgtaaaactcttta |
261 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||| |||||||||| | |||||||||||| || | ||||||||||| | |||||||||||| | |
|
|
| T |
15235335 |
ttggatcaatctcactatgttgagaagatcttaaggaaatataattattttggttgtaaacctgcaaggacaccttatgatctagatgtaaaactcttaa |
15235236 |
T |
|
| Q |
262 |
agaacatt |
269 |
Q |
| |
|
|||||||| |
|
|
| T |
15235235 |
agaacatt |
15235228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 17548798 - 17548905
Alignment:
| Q |
162 |
ttggatcaatctcaatatgtttagaagattttaaagaaatataatcacattggttgtaaacttgtgtgtgcaccttatgattcaagtgtaaaactcttta |
261 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||| |||||||||| | |||||||||||| || | ||||||||||| | |||||||||||| | |
|
|
| T |
17548798 |
ttggatcaatctcactatgttgagaagatcttaaggaaatataattattttggttgtaaacctgcaaggacaccttatgatctagatgtaaaactcttaa |
17548897 |
T |
|
| Q |
262 |
agaacatt |
269 |
Q |
| |
|
|||||||| |
|
|
| T |
17548898 |
agaacatt |
17548905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 32062 - 32168
Alignment:
| Q |
161 |
cttggatcaatctcaatatgtttagaagattttaaagaaatataatcacattggttgtaaacttgtgtgtgcaccttatgattcaagtgtaaaactcttt |
260 |
Q |
| |
|
||||||||| ||||| || ||| ||||||| |||| |||||||||| | ||| |||||||| || | ||||||||||| ||||||||||||| ||| |
|
|
| T |
32062 |
cttggatcagtctcactacgttgagaagatcttaaggaaatataattattttgattgtaaacctgcaagcacaccttatgatccaagtgtaaaacttttt |
32161 |
T |
|
| Q |
261 |
aagaaca |
267 |
Q |
| |
|
||||||| |
|
|
| T |
32162 |
aagaaca |
32168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 27568045 - 27567936
Alignment:
| Q |
161 |
cttggatcaatctcaatatgtttagaagattttaaagaaatataatcacattggttgtaaacttgtgtgtgcaccttatgattcaagtgtaaaactcttt |
260 |
Q |
| |
|
||||||||| ||||| || ||| ||||||| |||| ||||||||| | | | |||||||| || | | ||||||||||| ||||||||||||||||| |
|
|
| T |
27568045 |
cttggatcagtctcactacgttgagaagatcttaaggaaatataactatttcgattgtaaacatgcgagcacaccttatgatccaagtgtaaaactcttt |
27567946 |
T |
|
| Q |
261 |
aagaacattg |
270 |
Q |
| |
|
|| ||||||| |
|
|
| T |
27567945 |
aacaacattg |
27567936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 7006028 - 7005994
Alignment:
| Q |
232 |
caccttatgattcaagtgtaaaactctttaagaac |
266 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7006028 |
caccttatgatccaagtgtaaaactctttaagaac |
7005994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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