View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20400_high_1 (Length: 397)

Name: NF20400_high_1
Description: NF20400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20400_high_1
NF20400_high_1
[»] chr7 (13 HSPs)
chr7 (19-362)||(4712275-4712618)
chr7 (232-378)||(4630692-4630838)
chr7 (112-362)||(4846215-4846465)
chr7 (237-378)||(4697374-4697515)
chr7 (234-378)||(4672443-4672587)
chr7 (235-354)||(4666703-4666822)
chr7 (191-272)||(4636584-4636668)
chr7 (336-378)||(4653389-4653431)
chr7 (231-287)||(4784110-4784166)
chr7 (231-287)||(4816539-4816595)
chr7 (234-373)||(4863689-4863828)
chr7 (315-381)||(4647381-4647447)
chr7 (235-280)||(4643454-4643499)
[»] chr4 (1 HSPs)
chr4 (235-366)||(18925938-18926069)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 4712618 - 4712275
Alignment:
Q  19 gaaccttcattatttatcttccaatgactttctttcatttcaaattgagattcaaatcttcttcttctaagaaaaactcttactcccattataaatgcta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4712618 gaaccttcattatttatcttccaatgactttctttcatttcaaattgagattcaaatcttcttcttctaagaaaaactattactcccattataaatgcta 4712519  T
Q  119 gcaagagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtataatgtgtttgatggg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712518 gcaagagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtataatgtgtttgatggg 4712419  T
Q  219 attcaaaccagcgagattatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712418 attcaaaccagcgagattatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgt 4712319  T
Q  319 tgaagcttaatagaaatattaactctttcaatttgagtgcttcc 362  Q
    ||||||||||| ||||  |||||||||||||||| || ||||||    
T  4712318 tgaagcttaattgaaaggttaactctttcaatttcagagcttcc 4712275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 378
Target Start/End: Original strand, 4630692 - 4630838
Alignment:
Q  232 agattatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatag 331  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | ||||||||| ||  ||||||  ||| |||||||| ||||| ||||||| || |    
T  4630692 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattg 4630791  T
Q  332 aaatattaactctttcaatttgagtgcttccttcttcagagtgcata 378  Q
    ||| |||||||||||||||||||| ||||||||||| ||||| ||||    
T  4630792 aaagattaactctttcaatttgagagcttccttcttgagagtacata 4630838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 362
Target Start/End: Complemental strand, 4846465 - 4846215
Alignment:
Q  112 aatgctagcaagagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtataat---gt 208  Q
    ||||| |||||||||||||| | |||||||| ||||| |||||   ||| ||| ||||| ||||| |||||  | |||||||||| |||||||||   |     
T  4846465 aatgccagcaagagacatgaaactccaaccacagcaaccatgaacgtggttgacttctttgactttgatcggtgttttggagatgttggtataatcatgg 4846366  T
Q  209 gtttgatgggattcaaaccagcgagattatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttc 308  Q
    ||||| ||||||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||||| ||||  ||| | |||| |||||| ||    | |    
T  4846365 gtttgttgggattcataccagccagattgtttttatcacttactttgaaaatctcgattccattcaatatggtatctctgtaagttgtgtcga---ctgc 4846269  T
Q  309 tggttctcgttgaagcttaatagaaatattaactctttcaatttgagtgcttcc 362  Q
    ||||  |||||||||||| || |||| ||||||||||||||||| || ||||||    
T  4846268 tggtaatcgttgaagcttgattgaaagattaactctttcaatttcagagcttcc 4846215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 4697515 - 4697374
Alignment:
Q  237 atttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatagaaata 336  Q
    |||||||||| ||||||| |||||||| || ||||||| | ||||||||| |||  ||||| |||||| | ||||| ||||||| ||||| || |||| |    
T  4697515 atttttatcatttattttcaaaatctcgatgccattcaatgtgacatcaccgtatcttgtgaagatacgtcctggtgctcgttgtagcttgattgaaaga 4697416  T
Q  337 ttaactctttcaatttgagtgcttccttcttcagagtgcata 378  Q
    |||| |||||||||||||| ||||||||||| ||||||||||    
T  4697415 ttaagtctttcaatttgagagcttccttcttgagagtgcata 4697374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 378
Target Start/End: Original strand, 4672443 - 4672587
Alignment:
Q  234 attatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatagaa 333  Q
    ||||||||||||||||| |||||||||||| |||||||| | | ||||||||| ||  ||||||||| |  | | || |  | |||||||||||||||||    
T  4672443 attatttttatcacttactttgaaaatctcgattccatttaatgtgacatcactgtcttttgtgtagttcatatttgttagtggttgaagcttaatagaa 4672542  T
Q  334 atattaactctttcaatttgagtgcttccttcttcagagtgcata 378  Q
    | |||||||||||||||||||| ||||||||||| ||||| ||||    
T  4672543 agattaactctttcaatttgagagcttccttcttgagagtacata 4672587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 235 - 354
Target Start/End: Original strand, 4666703 - 4666822
Alignment:
Q  235 ttatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatagaaa 334  Q
    |||||||| ||||||||||| |||||||| |||||||| |  | |||||||| ||| |||||  ||| | |||||||| |||||||||||||||| ||||    
T  4666703 ttatttttgtcacttatttttaaaatctcgattccattaagaaggacatcactgtattttgtaaagacagtttctggtactcgttgaagcttaattgaaa 4666802  T
Q  335 tattaactctttcaatttga 354  Q
     |||||||||||||||||||    
T  4666803 gattaactctttcaatttga 4666822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 4636584 - 4636668
Alignment:
Q  191 gagatgatggtataatgtgtttgatgggattcaaaccagcgaga---ttatttttatcacttattttgaaaatctcaattccatt 272  Q
    |||||||| |||||||||||||| ||||||||||||||||||||   |||| ||||||||| |||||||||||||| ||||||||    
T  4636584 gagatgatagtataatgtgtttgttgggattcaaaccagcgagattgttatatttatcactaattttgaaaatctcgattccatt 4636668  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 4653389 - 4653431
Alignment:
Q  336 attaactctttcaatttgagtgcttccttcttcagagtgcata 378  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4653389 attaactctttcaatttgagtgcttccttcttcagagtgcata 4653431  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 4784166 - 4784110
Alignment:
Q  231 gagattatttttatcacttattttgaaaatctcaattccattcattatgacatcacg 287  Q
    |||||||||||||||||||||||| |||||||||||||||||||   ||||||||||    
T  4784166 gagattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacg 4784110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 4816595 - 4816539
Alignment:
Q  231 gagattatttttatcacttattttgaaaatctcaattccattcattatgacatcacg 287  Q
    |||||||||||||||||||||||| |||||||||||||||||||   ||||||||||    
T  4816595 gagattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacg 4816539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 373
Target Start/End: Original strand, 4863689 - 4863828
Alignment:
Q  234 attatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatagaa 333  Q
    |||||||||||| |||||||| |||||||| ||||||||||   | ||||||||||| |||||  | ||  | | ||||  | |||| | ||| |  |||    
T  4863689 attatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaa 4863788  T
Q  334 atattaactctttcaatttgagtgcttccttcttcagagt 373  Q
    |  ||||||||||||||||||| |||||||||||||||||    
T  4863789 aggttaactctttcaatttgagagcttccttcttcagagt 4863828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 4647381 - 4647447
Alignment:
Q  315 tcgttgaagcttaatagaaatattaactctttcaatttgagtgcttccttcttcagagtgcatatga 381  Q
    |||||||||||| || |||| ||||||||||||||||||| | |||||| ||| ||||| |||||||    
T  4647381 tcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgagagtacatatga 4647447  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 4643454 - 4643499
Alignment:
Q  235 ttatttttatcacttattttgaaaatctcaattccattcattatga 280  Q
    |||||||| ||||||||||| |||||||| |||||||||| |||||    
T  4643454 ttatttttgtcacttatttttaaaatctcgattccattcaatatga 4643499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 366
Target Start/End: Complemental strand, 18926069 - 18925938
Alignment:
Q  235 ttatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaatagaaa 334  Q
    |||||||| ||||||||||| |||||||| || ||||||| | |||||| |||||| |||| ||||||| |||||||| ||||||| ||||| || ||||    
T  18926069 ttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacggtattttgagtagatattttctggtgctcgttgtagctttattgaaa 18925970  T
Q  335 tattaactctttcaatttgagtgcttccttct 366  Q
     ||||||||||| |||||| | ||||||||||    
T  18925969 gattaactcttttaatttgcgagcttccttct 18925938  T

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