View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20400_high_2 (Length: 389)

Name: NF20400_high_2
Description: NF20400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20400_high_2
NF20400_high_2
[»] chr5 (2 HSPs)
chr5 (14-374)||(8508261-8508628)
chr5 (259-325)||(6435251-6435317)
[»] chr2 (3 HSPs)
chr2 (264-326)||(44285556-44285618)
chr2 (242-327)||(36995612-36995698)
chr2 (266-326)||(33004594-33004654)
[»] chr8 (1 HSPs)
chr8 (242-316)||(8865914-8865988)
[»] chr4 (1 HSPs)
chr4 (242-327)||(28627141-28627227)
[»] chr6 (1 HSPs)
chr6 (246-326)||(27739022-27739103)
[»] chr3 (1 HSPs)
chr3 (242-309)||(47924491-47924559)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 8508628 - 8508261
Alignment:
Q  14 cacatggaaatggggcctcattgtctataagatgggtcttccggacaattaagcccttaatcattttgtcctttccttaattaacagataacaaaatccg 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8508628 cacatggaaatggggcctcattgtctataaaatgggtcttccggacaattaagcccttaatcattttgtcctttccttaattaacagataacaaaatccg 8508529  T
Q  114 attaccttagccacaaaaataaagcaaaagtttaggttcttttctttgatatcttaggtttcaatcacagagatgtccctgcagtgatggattttga-at 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  8508528 attaccttagccacaaaaataaagcaaaagtttaggttcttttctttgatatcttaggtttcaatcacagagatgtccctgcagtgatggattttgattt 8508429  T
Q  213 tttttatgggggtgacaaatattttc------tgaattaaacagttttaaaaactagcaaaattatggattggtgcagtggtttattttcttgaatctaa 306  Q
    ||||||||||||||||||||||||||      || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8508428 tttttatgggggtgacaaatattttcagaatatgtattaaacagttttaaaaactagcaaaattatggattggtgcagtggtttattttcttgaatctaa 8508329  T
Q  307 catagagaacggcagttcaaacccacgcccatagggtgtttaggagctcgtcaatccactgtgatacc 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8508328 catagagaacggcagttcaaacccacgcccatagggtgtttaggagctcgtcaatccactgtgatacc 8508261  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 6435317 - 6435251
Alignment:
Q  259 actagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttca 325  Q
    ||||| |||||| |||| ||||| ||||||||||||| |||||||||||||| |||||||| |||||    
T  6435317 actagtaaaattgtggactggtgtagtggtttattttgttgaatctaacataaagaacggcggttca 6435251  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 44285618 - 44285556
Alignment:
Q  264 caaaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttcaa 326  Q
    ||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  44285618 caaaattgtggactggtgcagtggtttattttgttgaatctatcatagagaacggcggttcaa 44285556  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 36995612 - 36995698
Alignment:
Q  242 attaaacagttttaaaa-actagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttcaaa 327  Q
    ||||||||||||||||| | |||||||||| || |||||||||||||| | |||| ||||| ||||||| |||||| || |||||||    
T  36995612 attaaacagttttaaaacaatagcaaaattgtgaattggtgcagtggtatgttttgttgaaactaacatggagaaccgcggttcaaa 36995698  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 33004594 - 33004654
Alignment:
Q  266 aaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttcaa 326  Q
    |||||||| |||||||||||||||| |||| ||||| ||||||| |||||| || ||||||    
T  33004594 aaattatgaattggtgcagtggtttgttttgttgaaactaacatggagaacagcggttcaa 33004654  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 8865914 - 8865988
Alignment:
Q  242 attaaacagttttaaaaactagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaac 316  Q
    |||||||||||| ||| | |||||||||| || ||||||||||| || | |||| ||||| ||||||| ||||||    
T  8865914 attaaacagtttaaaataatagcaaaattgtgaattggtgcagttgtatgttttgttgaaactaacatggagaac 8865988  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 28627141 - 28627227
Alignment:
Q  242 attaaacagttttaaaa-actagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttcaaa 327  Q
    ||||||||||||||||| | |||||||||| || ||||||| |||||| | |||| || || ||||||| |||||| || |||||||    
T  28627141 attaaacagttttaaaataatagcaaaattgtgaattggtgtagtggtatgttttgttaaaactaacatggagaaccgcggttcaaa 28627227  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 27739022 - 27739103
Alignment:
Q  246 aacagttttaaaa-actagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttcaa 326  Q
    ||||||||||| | ||||||||| || ||||||||||||||| ||| |||| ||||||||  |||| || |||| |||||||    
T  27739022 aacagttttaagatactagcaaacttgtggattggtgcagtgatttgttttgttgaatcttgcataaaggacggtagttcaa 27739103  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 47924559 - 47924491
Alignment:
Q  242 attaaacagttttaaaa-actagcaaaattatggattggtgcagtggtttattttcttgaatctaacat 309  Q
    |||||||| |||||||| | |||||||||| || |||||||||||||| | |||| ||||| |||||||    
T  47924559 attaaacaattttaaaataatagcaaaattgtgaattggtgcagtggtatgttttgttgaaactaacat 47924491  T

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