View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20400_high_3 (Length: 322)
Name: NF20400_high_3
Description: NF20400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20400_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 17136681 - 17136372
Alignment:
| Q |
13 |
tgtttgcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggt |
112 |
Q |
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| T |
17136681 |
tgtttgcagggaagacttaccgattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggt |
17136582 |
T |
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| Q |
113 |
ggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccacgtgac |
212 |
Q |
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| T |
17136581 |
ggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccacatgac |
17136482 |
T |
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| Q |
213 |
tactacattgttgtcacaacaaggttcacgtcacaggtgctgaatgcttcatcgattcttcattacagaaactcagcgggaagagtttctggtcctcttc |
312 |
Q |
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| T |
17136481 |
tactacattgttgtcacaacaaggttcacgtcacaggtgctgaatgcttcatcgattcttcattacagaaactcagcgagaagagtttctggtcctcttc |
17136382 |
T |
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| Q |
313 |
ctgctggacc |
322 |
Q |
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| T |
17136381 |
ctgctggacc |
17136372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 17347123 - 17347444
Alignment:
| Q |
1 |
aaggtactcgaatgtttgcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaa |
100 |
Q |
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| T |
17347123 |
aaggtactcgaatgtttgcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaa |
17347222 |
T |
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| Q |
101 |
gcttgttgaggtggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaa |
200 |
Q |
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| T |
17347223 |
gcttgttgaggtggaaggaagtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaa |
17347322 |
T |
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| Q |
201 |
ccaccacgtgactactacattgttgtcacaacaaggttcacgtcacaggtgctgaatgcttcatcgattcttcattacagaaactcagcgggaagagttt |
300 |
Q |
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| T |
17347323 |
ccaccacatgactactacattgttgtcacaacaaggttcacgtcacaggtgctgaatgcttcatcgattcttcattatagtaactcggcaggaagtgttt |
17347422 |
T |
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| Q |
301 |
ctggtcctcttcctgctggacc |
322 |
Q |
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| T |
17347423 |
ctggtcctcttcctggtggacc |
17347444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 37091303 - 37091114
Alignment:
| Q |
18 |
gcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggtggaag |
117 |
Q |
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|||||||| || ||||||||||||||||||||||| || | || || || |||||||||||||| ||||| |||||||| || || ||||| ||||||| |
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| T |
37091303 |
gcaggcaatacatacagattccggatatcaaatgttggactcacaacttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaag |
37091204 |
T |
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| Q |
118 |
gaagtcacactgtgcaaaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccac |
207 |
Q |
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||| ||||| | ||||||| ||| || || ||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
37091203 |
gaatccacacactacaaaacacttatgattcccttgatattcatttggggcagagttactctgtattggttactgctgatcaaccaccac |
37091114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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