View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20400_low_1 (Length: 474)
Name: NF20400_low_1
Description: NF20400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20400_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 15627104 - 15627549
Alignment:
| Q |
20 |
atccaccaacaccaactcttcttgcaatgccttaggctcaataggccttctcccacaagctacctcaagcagaagtgcaccaaatgcaaaaacgtctgaa |
119 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15627104 |
atccaccaacactaactcttcttgcaatgccttaggctcaataggccttctcccacaagctacctcaagcagaagtgcaccaaatgcaaaaacgtctgaa |
15627203 |
T |
|
| Q |
120 |
ctcgttgatgctcttcctgttctaggtaattccggtgccaaatagcctaaggttcccaccactcttgtggtccctggattagcaccgtgttcatataacc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15627204 |
ctcgttgatgctcttcctgttctaggtaattccggtgccaaatagcctaaggttcccaccactcttgtggtccctggattagcaccgtgttcatataacc |
15627303 |
T |
|
| Q |
220 |
ttgccaaaccaaaatcacctaatcttccgttgagttcaaagtctaaaagaacattgctagccttaacatctctgtgtattacaacttgctcatagccttc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15627304 |
ttgccaaaccaaaatcacctaatcttccgttgagttcaaagtctaaaagaacattgctagccttaacatctctgtgtattacaacttgctcatagccttc |
15627403 |
T |
|
| Q |
320 |
atgtagatacaaaaggcctgaagcgacaccctttattatcttgaacctttgttcccaacttaacacaatttctgtgtttccaaacaagtacttatctaag |
419 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15627404 |
atgtagatacaaaaggcctgaagcaacaccctttattatcttgaacctttgttcccaacttaacacaatttctgtgttttcaaacaagtacttatctaag |
15627503 |
T |
|
| Q |
420 |
cttccattggccatgaagtcatacacaagtagcaggtcacctttgc |
465 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
15627504 |
cttccattagccatgaagtcatacacaagtagcaggtcgcctttgc |
15627549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 457
Target Start/End: Complemental strand, 22934561 - 22934125
Alignment:
| Q |
21 |
tccaccaacaccaactcttcttgcaatgccttaggctcaataggccttctcccacaagctacctcaagcagaagtgcaccaaatgcaaaaacgtctgaac |
120 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| |||||||||||||| || ||||| ||||| || ||||| || || |||||||||||||| || | |
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|
| T |
22934561 |
tccaccaacaccagttcttcttgtaatgccttaggttcaataggccttcttccgcaagcaacctcgagaagaagcgcgccgaatgcaaaaacgtcggagc |
22934462 |
T |
|
| Q |
121 |
tcgttgatgctcttcctgttctaggtaattccggtgccaaatagcctaaggttcccaccactcttgtggtccctggattagcaccgtgttcatataacct |
220 |
Q |
| |
|
| || ||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||||| |||||||| ||||| |
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|
| T |
22934461 |
ttgtagatgcctttcctgttctaggcaattctggtgccaaatagcctaatgttcccaccactcttgtcgtgccgggattagcaccatgttcatacaacct |
22934362 |
T |
|
| Q |
221 |
tgccaaaccaaaatcacctaatcttccgttgagttcaaagtctaaaagaacattgctagccttaacatctctgtgtattacaacttgctcatagccttca |
320 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| | ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| |||||| |
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|
| T |
22934361 |
tgccaatccaaaatcacctaatcttccattgagttcgcaatctaagagaacattactagccttaacatctctatgtattaccacttgctcataaccttca |
22934262 |
T |
|
| Q |
321 |
tgtagatacaaaaggcctgaagcgacaccctttattatcttgaacctttgttcccaacttaacacaatttctgtgtttccaaacaagtacttatctaagc |
420 |
Q |
| |
|
|||||| ||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| | | |||||||||| || ||||||| |
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|
| T |
22934261 |
tgtagaaacaaaagacctgcagcaacaccctttattatcttaaacctttgttcccaacttagcacaatttctgaatcttcaaacaagtatttgtctaagc |
22934162 |
T |
|
| Q |
421 |
ttccattggccatgaagtcatacacaagtagcaggtc |
457 |
Q |
| |
|
||||||| | |||||| || ||||||||||| ||||| |
|
|
| T |
22934161 |
ttccatttgacatgaaatcgtacacaagtaggaggtc |
22934125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 20 - 461
Target Start/End: Original strand, 22921029 - 22921470
Alignment:
| Q |
20 |
atccaccaacaccaactcttcttgcaatgccttaggctcaataggccttctcccacaagctacctcaagcagaagtgcaccaaatgcaaaaacgtctgaa |
119 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||| |||||||||||||| |||||| | ||||| || ||||| || || ||||||||||| || || |
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|
| T |
22921029 |
atccaccaataccaactcatcttgtgatgccttaggttcaataggccttcttccacaaacaacctcgagaagaagcgcgccgaatgcaaaaacatcggag |
22921128 |
T |
|
| Q |
120 |
ctcgttgatgctcttcctgttctaggtaattccggtgccaaatagcctaaggttcccaccactcttgtggtccctggattagcaccgtgttcatataacc |
219 |
Q |
| |
|
|| |||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||| |||| |
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|
| T |
22921129 |
cttgttgttgctcgtcctgttctaggtaactccggtgccaaatagcctaatgttcccaccactcttgttgtgcctggattagcaccatgttcatacaacc |
22921228 |
T |
|
| Q |
220 |
ttgccaaaccaaaatcacctaatcttccgttgagttcaaagtctaaaagaacattgctagccttaacatctctgtgtattacaacttgctcatagccttc |
319 |
Q |
| |
|
||||||| || ||||| ||||||||||| ||||||||||| || || || ||||||||||| ||||||||||| || ||||| ||||||||||||||||| |
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|
| T |
22921229 |
ttgccaatccgaaatcgcctaatcttccattgagttcaaaatccaacagcacattgctagctttaacatctctatggattaccacttgctcatagccttc |
22921328 |
T |
|
| Q |
320 |
atgtagatacaaaaggcctgaagcgacaccctttattatcttgaacctttgttcccaacttaacacaatttctgtgtttccaaacaagtacttatctaag |
419 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||| |||| ||||| | | ||||||||||||| || ||| |
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|
| T |
22921329 |
atgtagatacaaaagacctgaagcaacaccctttattatcttaaacctctgttcccaacttagcacatattctgaatcttcaaacaagtacttgtccaag |
22921428 |
T |
|
| Q |
420 |
cttccattggccatgaagtcatacacaagtagcaggtcacct |
461 |
Q |
| |
|
|||||||| |||||| | ||||||||||| | ||||||||| |
|
|
| T |
22921429 |
cttccattcgccatgtaatcatacacaagcaaaaggtcacct |
22921470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 22874815 - 22874860
Alignment:
| Q |
58 |
caataggccttctcccacaagctacctcaagcagaagtgcaccaaa |
103 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||| ||||||||| |
|
|
| T |
22874815 |
caataggccttctaccacaagcaacctcaagaagaaatgcaccaaa |
22874860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 22813915 - 22813959
Alignment:
| Q |
59 |
aataggccttctcccacaagctacctcaagcagaagtgcaccaaa |
103 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||| ||||||||| |
|
|
| T |
22813915 |
aataggccttctaccacaagcaacctcaagaagaaatgcaccaaa |
22813959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 22892841 - 22892885
Alignment:
| Q |
59 |
aataggccttctcccacaagctacctcaagcagaagtgcaccaaa |
103 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||| ||||||||| |
|
|
| T |
22892841 |
aataggccttctaccacaagcaacctcaagaagaaatgcaccaaa |
22892885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 7285352 - 7285475
Alignment:
| Q |
160 |
aatagcctaaggttcccaccactcttgtggtccctggattagcaccgtgttcatataaccttgccaaaccaaaatcacctaatcttccgttgagttcaaa |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||| ||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
7285352 |
aatagcctaaggttcccaccactgttgtggttgctggattagcaccatgttcatacaaccttgcccaactaaaatcaactaatcttccattgagttcaaa |
7285451 |
T |
|
| Q |
260 |
gtctaaaagaacattgctagcctt |
283 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
7285452 |
atctaaaagcacattgctagcctt |
7285475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 245
Target Start/End: Original strand, 30659193 - 30659395
Alignment:
| Q |
43 |
gcaatgccttaggctcaataggccttctcccacaagctacctcaagcagaagtgcaccaaatgcaaaaacgtctgaactcgttgatgctcttcctgttct |
142 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| | || || | || | ||| ||||| ||||| || || ||||| |||| || | | |||||||| |
|
|
| T |
30659193 |
gcaatgctttaggctcaataggtcttctcccacaaaccacttccaacaacaatgccccaaacgcaaacacatcagaactagttgttggtttccctgttct |
30659292 |
T |
|
| Q |
143 |
aggtaattccggtgccaaatagcctaaggttcccaccactcttgtggtccctggattagcaccgtgttcatataaccttgccaaaccaaaatcacctaat |
242 |
Q |
| |
|
| ||| || ||||| ||||| || || ||||||||||| || || || | |||||| |||| || ||||| | | | ||||||||||||||||||||| |
|
|
| T |
30659293 |
cgttaactcgggtgctaaataccccaaagttcccaccaccctcgtcgtgcttggattctcaccatgatcataaagcttagccaaaccaaaatcacctaat |
30659392 |
T |
|
| Q |
243 |
ctt |
245 |
Q |
| |
|
||| |
|
|
| T |
30659393 |
ctt |
30659395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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