View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20400_low_3 (Length: 389)
Name: NF20400_low_3
Description: NF20400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20400_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 8508628 - 8508261
Alignment:
| Q |
14 |
cacatggaaatggggcctcattgtctataagatgggtcttccggacaattaagcccttaatcattttgtcctttccttaattaacagataacaaaatccg |
113 |
Q |
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| T |
8508628 |
cacatggaaatggggcctcattgtctataaaatgggtcttccggacaattaagcccttaatcattttgtcctttccttaattaacagataacaaaatccg |
8508529 |
T |
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| Q |
114 |
attaccttagccacaaaaataaagcaaaagtttaggttcttttctttgatatcttaggtttcaatcacagagatgtccctgcagtgatggattttga-at |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8508528 |
attaccttagccacaaaaataaagcaaaagtttaggttcttttctttgatatcttaggtttcaatcacagagatgtccctgcagtgatggattttgattt |
8508429 |
T |
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| Q |
213 |
tttttatgggggtgacaaatattttc------tgaattaaacagttttaaaaactagcaaaattatggattggtgcagtggtttattttcttgaatctaa |
306 |
Q |
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| T |
8508428 |
tttttatgggggtgacaaatattttcagaatatgtattaaacagttttaaaaactagcaaaattatggattggtgcagtggtttattttcttgaatctaa |
8508329 |
T |
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| Q |
307 |
catagagaacggcagttcaaacccacgcccatagggtgtttaggagctcgtcaatccactgtgatacc |
374 |
Q |
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| T |
8508328 |
catagagaacggcagttcaaacccacgcccatagggtgtttaggagctcgtcaatccactgtgatacc |
8508261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 6435317 - 6435251
Alignment:
| Q |
259 |
actagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttca |
325 |
Q |
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| T |
6435317 |
actagtaaaattgtggactggtgtagtggtttattttgttgaatctaacataaagaacggcggttca |
6435251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 44285618 - 44285556
Alignment:
| Q |
264 |
caaaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttcaa |
326 |
Q |
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| T |
44285618 |
caaaattgtggactggtgcagtggtttattttgttgaatctatcatagagaacggcggttcaa |
44285556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 36995612 - 36995698
Alignment:
| Q |
242 |
attaaacagttttaaaa-actagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttcaaa |
327 |
Q |
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| T |
36995612 |
attaaacagttttaaaacaatagcaaaattgtgaattggtgcagtggtatgttttgttgaaactaacatggagaaccgcggttcaaa |
36995698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 33004594 - 33004654
Alignment:
| Q |
266 |
aaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttcaa |
326 |
Q |
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| T |
33004594 |
aaattatgaattggtgcagtggtttgttttgttgaaactaacatggagaacagcggttcaa |
33004654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 8865914 - 8865988
Alignment:
| Q |
242 |
attaaacagttttaaaaactagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaac |
316 |
Q |
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| T |
8865914 |
attaaacagtttaaaataatagcaaaattgtgaattggtgcagttgtatgttttgttgaaactaacatggagaac |
8865988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 28627141 - 28627227
Alignment:
| Q |
242 |
attaaacagttttaaaa-actagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttcaaa |
327 |
Q |
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||||||||||||||||| | |||||||||| || ||||||| |||||| | |||| || || ||||||| |||||| || ||||||| |
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| T |
28627141 |
attaaacagttttaaaataatagcaaaattgtgaattggtgtagtggtatgttttgttaaaactaacatggagaaccgcggttcaaa |
28627227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 27739022 - 27739103
Alignment:
| Q |
246 |
aacagttttaaaa-actagcaaaattatggattggtgcagtggtttattttcttgaatctaacatagagaacggcagttcaa |
326 |
Q |
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| T |
27739022 |
aacagttttaagatactagcaaacttgtggattggtgcagtgatttgttttgttgaatcttgcataaaggacggtagttcaa |
27739103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 47924559 - 47924491
Alignment:
| Q |
242 |
attaaacagttttaaaa-actagcaaaattatggattggtgcagtggtttattttcttgaatctaacat |
309 |
Q |
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|||||||| |||||||| | |||||||||| || |||||||||||||| | |||| ||||| ||||||| |
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| T |
47924559 |
attaaacaattttaaaataatagcaaaattgtgaattggtgcagtggtatgttttgttgaaactaacat |
47924491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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