View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20400_low_6 (Length: 311)
Name: NF20400_low_6
Description: NF20400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20400_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 11687469 - 11687335
Alignment:
| Q |
157 |
agggtcacacttagagtttgaatttcaatgtatagggttgagttgtgaagagtatattttgcattaattgtacatgattttacttagattatattgtaga |
256 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| ||| |
|
|
| T |
11687469 |
agggtcacacttggagtttgaacttcaatgtgcagggttgagttgtgaagagtatattttgcattaattctacatgtttttacttagattatgttgaaga |
11687370 |
T |
|
| Q |
257 |
acctaaattcttatgcatttgaaataatatcaata |
291 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| |
|
|
| T |
11687369 |
agttaaattcttatgcatttgaattaatatcaata |
11687335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 11691202 - 11691128
Alignment:
| Q |
194 |
ttgagttgtgaagagtatattttgcattaattgtacatgattttacttagattatattgtagaacctaaattctt |
268 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || ||| ||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
11691202 |
ttgacttgtgaagagtatattttgcattaattctaaatgtttttacttagattatgttgcagaagttaaattctt |
11691128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University