View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20400_low_8 (Length: 275)
Name: NF20400_low_8
Description: NF20400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20400_low_8 |
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| [»] scaffold0011 (2 HSPs) |
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| [»] scaffold0364 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 130 - 259
Target Start/End: Complemental strand, 22536296 - 22536166
Alignment:
| Q |
130 |
aacatatttgaggatctgaacaagctggtgaaagatagacatgatcccatttacacacataactattaagataagtggactgctctgagagaaagagt-g |
228 |
Q |
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| T |
22536296 |
aacatatttgaggatctgaacaagctggtgaaagatagacatgatcccattcacatacataactatgaagataagtggactgctctaagagaaagagtag |
22536197 |
T |
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| Q |
229 |
acacaattatgtgtgaacttcagaagctatc |
259 |
Q |
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| T |
22536196 |
acacaattatgtgtgaacttcagaagctatc |
22536166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 22536496 - 22536386
Alignment:
| Q |
14 |
aggactctgatgatgaaatgcctgatgttaatgctgacagtaaccccaaaatctcatctcaataaacaattgatataccttcctcatccacaatccagcc |
113 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22536496 |
aggactctgacgatgaaatgcctgatgttaatgctcacagtaaccacaacatctcatctcaataaacaattgatataccttcctcatccacaatccagcc |
22536397 |
T |
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| Q |
114 |
tatccaagatc |
124 |
Q |
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| T |
22536396 |
tatccaagatc |
22536386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 19750186 - 19750077
Alignment:
| Q |
15 |
ggactctgatgatgaaatgcctgatgttaatgctgacagtaaccccaaaatctcatctcaataaacaattgatataccttcctcatccacaatccagcct |
114 |
Q |
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| T |
19750186 |
ggactttgatgatgaaatgcctgatgttaacgctgacagtaatcctaacatctcatctcaacaaacaattgatataccttcctcatcaacaaatcagctt |
19750087 |
T |
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| Q |
115 |
atccaagatc |
124 |
Q |
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| T |
19750086 |
atccatgatc |
19750077 |
T |
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Target: scaffold0011 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 60816 - 60730
Alignment:
| Q |
15 |
ggactctgatgatgaaatgcctgatgttaatgctgacagtaaccccaaaatctcatctcaataaacaattgatataccttcctcatc |
101 |
Q |
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| T |
60816 |
ggactctgatgatgaaatacctgatgtttatactgacaataacctcaatatttcatctcaacaaacaattgaaataccttcttcatc |
60730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 60616 - 60521
Alignment:
| Q |
132 |
catatttgaggatctgaacaagctggtgaaagatagacatgatcccatttacacacataactattaagataagtggactgctctgagagaaagagt |
227 |
Q |
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| T |
60616 |
catatttgcggatctgaacatgctggtgaaggctagaaaggatcccattcgcacagagaaatatgaagataagtggactgcttttagagaaagagt |
60521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 19886812 - 19886921
Alignment:
| Q |
136 |
tttgaggatctgaacaagctggtgaaagatagacatgatcccatttacacacataactattaagataagtggactgctctgagagaaagagt-gacacaa |
234 |
Q |
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|||||||||||||||| |||||||||| |||| ||||||| ||| |||| | || ||| ||||||||||||||||||| | ||||||||| |||||| |
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| T |
19886812 |
tttgaggatctgaacagactggtgaaagctagaaatgatccaattcacactgagaagtatgaagataagtggactgctctaaaagaaagagtggacacag |
19886911 |
T |
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| Q |
235 |
ttatgtgtga |
244 |
Q |
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| T |
19886912 |
ttatgtgtga |
19886921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0364 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0364
Description:
Target: scaffold0364; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 8781 - 8822
Alignment:
| Q |
15 |
ggactctgatgatgaaatgcctgatgttaatgctgacagtaa |
56 |
Q |
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| T |
8781 |
ggactctgatgatgaaatgcctgatgttaatgcggacagtaa |
8822 |
T |
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