View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20401_low_1 (Length: 531)
Name: NF20401_low_1
Description: NF20401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20401_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 162 - 514
Target Start/End: Original strand, 32897369 - 32897725
Alignment:
| Q |
162 |
ggaacccttacatcaccttcaatgttggacaattcaatagttggattaaagggagtgttagaaggttcaccagccaaccaagaatcaagtat----cttc |
257 |
Q |
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| T |
32897369 |
ggaacccttacatcaccttcaatgttggacaattcaatagttggattaaagggagtgttagaaggttcaccagccaaccaagaatcaagtatatatcttc |
32897468 |
T |
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| Q |
258 |
taacaattcctgtgattagcaaagatgcatgtgtatgaattggcaatctccaagcctaagaaaaatctcagcttaccaaggttaaattgttgatcgaaga |
357 |
Q |
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| T |
32897469 |
taacaattcctctgattaacaaagatgcatgtgtatgaattggcaatctccaagcctaagaaaaatctcagcttaccaaggttaaattgttgatcgaaga |
32897568 |
T |
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| Q |
358 |
aatatttgacatcctgaatttcttgtatagaactaccggctaacacaatatcatcaacaaataaacactagaaagacaataaaatggaatgatcagattg |
457 |
Q |
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| T |
32897569 |
aatatttgacatcctgaatttcttgcatagaactaccggctaacacaatatcatcaacaaataaacactagaaagacaataaaatggaatgataagattg |
32897668 |
T |
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| Q |
458 |
acattgttcatatctcaaggaaactaaaaagaagatgaaagcttagagtgccattgt |
514 |
Q |
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| T |
32897669 |
acattgttcatatctcaaggaaactaaaaggaagatgaaagcttagaatgccattgt |
32897725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 32896818 - 32896982
Alignment:
| Q |
1 |
ttagctagttgggaattgctgggcacaagaagtaaaacaatgaacttaaattgcaacttttctctcattacatgccaatccagctctgtgtttgcttctt |
100 |
Q |
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| T |
32896818 |
ttagctagttgggaattgctgggcacaagaagtaaaacaatgaacttaaattgcaacttttctctcattacatgccaatccagctctgtgtttgcttctt |
32896917 |
T |
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| Q |
101 |
tcttagaatggagggttatgatatagttaaatagcatatctgctatcacaatataaaatttggaa |
165 |
Q |
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| T |
32896918 |
tcttagaatggagggttatgatatagttaaatagcatatctgctatcacaatataaaatttggaa |
32896982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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