View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20401_low_2 (Length: 522)

Name: NF20401_low_2
Description: NF20401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20401_low_2
NF20401_low_2
[»] chr7 (6 HSPs)
chr7 (20-517)||(26618322-26618817)
chr7 (23-433)||(26620301-26620697)
chr7 (26-389)||(26607765-26608122)
chr7 (445-506)||(26620735-26620796)
chr7 (134-387)||(8248594-8248831)
chr7 (445-517)||(26608204-26608275)
[»] chr4 (5 HSPs)
chr4 (95-433)||(37744339-37744676)
chr4 (163-495)||(37750312-37750646)
chr4 (113-446)||(24558302-24558639)
chr4 (139-180)||(21318401-21318442)
chr4 (446-495)||(37744702-37744751)
[»] chr8 (3 HSPs)
chr8 (105-382)||(6223888-6224163)
chr8 (232-433)||(17633856-17634056)
chr8 (376-495)||(14998069-14998189)
[»] chr6 (3 HSPs)
chr6 (105-433)||(24631517-24631841)
chr6 (136-387)||(1943129-1943378)
chr6 (312-389)||(30129181-30129257)
[»] chr2 (5 HSPs)
chr2 (144-495)||(27150555-27150894)
chr2 (143-433)||(7702953-7703235)
chr2 (129-423)||(24479673-24479965)
chr2 (312-387)||(31481317-31481392)
chr2 (211-295)||(40016936-40017022)
[»] chr1 (4 HSPs)
chr1 (144-423)||(39367443-39367720)
chr1 (160-423)||(18308714-18308975)
chr1 (316-423)||(17113447-17113554)
chr1 (445-495)||(39367757-39367807)
[»] chr5 (1 HSPs)
chr5 (118-301)||(31571518-31571702)
[»] chr3 (2 HSPs)
chr3 (87-359)||(25338393-25338663)
chr3 (122-178)||(11050946-11051002)
[»] scaffold0002 (2 HSPs)
scaffold0002 (126-365)||(445564-445801)
scaffold0002 (397-449)||(445854-445906)


Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Original strand, 26618322 - 26618817
Alignment:
Q  20 aagtaggccaaatcacttatttcggtagctttaatgtgtggttattgtgattctagctgnnnnnnnctgcttacagcctgctagaattggttttactttc 119  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  26618322 aagtaggccaaatcacttatttgggtagctttaatgtgtggttattgtgattctagctgtttttttgtgcttacagcctgctagaattggttttactttc 26618421  T
Q  120 atggaatataacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagtt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26618422 atggaatataacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgcttgcttcatctctagcagaggtaagtt 26618521  T
Q  220 atgctctatctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacatt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||    
T  26618522 atgctctatctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttg--tttttgctctcacatt 26618619  T
Q  320 ccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgctt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26618620 ccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaactatgaaagatggtgttgcaagccaagaatatttttcttgcattagcttgctt 26618719  T
Q  420 agattccttcatggttatttattattttttggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttgatattcttgga 517  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  26618720 agattccctcatggttatttattattttttggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttgatttgcttgga 26618817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 433
Target Start/End: Original strand, 26620301 - 26620697
Alignment:
Q  23 taggccaaatcacttatttcggtagctttaatgtgtggttattgtgattctagctgnnnnnnnctgcttacagcctgctagaattggttttactttcatg 122  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        ||||||     |||||| ||||||||||||||||||    
T  26620301 taggccaaatcacttatttgggtagctttaatgtgtggttattgtgattctagctgtcttttg-tgcttagg---tgctaggattggttttactttcatg 26620396  T
Q  123 gaatataacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttc-atctctagcagaggtaagttat 221  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| |||||||| ||||    
T  26620397 gaatataaaaatgtcagatccttcctctgttcataaagtagcaacacttaaatcaataggattttgttgcttgtttcaatctttagtagaggtaaattat 26620496  T
Q  222 gctctatctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattcc 321  Q
    ||| ||||||||||  |||||||||         |||||||| ||||| |||||||||||||||||||||||| ||||||          ||||||||||    
T  26620497 gctttatctttataaatcaattttt---------ttggatttggttcaatcatttatacctcaaatttactttgattttg--tttttgctctcacattcc 26620585  T
Q  322 ttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttag 421  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| |||||||||||||||| ||||||||||||||||||| |||||    
T  26620586 ttctaaatacttgcagctagaagacttttgttgtttcaaatgaagctatgaaagatgatgttgcaagccaagaagatttttgttgcattagctttcttag 26620685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 26 - 389
Target Start/End: Original strand, 26607765 - 26608122
Alignment:
Q  26 gccaaatcacttatttcggtagctttaatgtgtggttattgtgattctagctgnnnnnnnctgcttacagcctgctagaattggttttactttcatggaa 125  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||        | || | ||  ||||||||||||||||||||||||||||    
T  26607765 gccaaatcacttatttgggtatctttaatgtgtggttattgtgattctagctgttttttgtt-ctcatag--tgctagaattggttttactttcatggaa 26607861  T
Q  126 tataacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctc 225  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| || |||||    
T  26607862 tataacaatgtcagatccttcctctgttctggaagtagcaacacttaaatcaataggattttgttgcttgcttcatctttagtagaggtaaattctgctc 26607961  T
Q  226 tatctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttct 325  Q
    ||||||||||||||| ||||||| ||| |||||||||| ||||| |||||||||| | ||||||||||||||||||          ||||||||||||||    
T  26607962 tatctttatatctcatttttttattgattgttggatttggttcaatcatttatacgt-aaatttacttttattttg--tttttgctctcacattccttct 26608058  T
Q  326 aaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagc 389  Q
    | ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  26608059 acatacttgcagctagaagacttttgttgtttcaaatgaagctatgaaagatggtgttgcaagc 26608122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 445 - 506
Target Start/End: Original strand, 26620735 - 26620796
Alignment:
Q  445 tttttggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttg 506  Q
    |||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||    
T  26620735 tttttggtggaaaaagtgattattactaggtttagttaggatatcttatttgtagtattttg 26620796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 387
Target Start/End: Complemental strand, 8248831 - 8248594
Alignment:
Q  134 tgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatcttta 233  Q
    |||||||||  ||||||||||| ||||||||||| ||||||  ||||||||||||||  ||||||      ||  | |||||| || ||||| || ||||    
T  8248831 tgtcagatcactcctctgttcacaaagtagcaacccttaaagtaataggattttgtttcttgcttt-----taataaaggtaaattctgctccattttta 8248737  T
Q  234 tatctcaatttttt--agtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatac 331  Q
    ||||| ||||||||  || || | ||||||||  |||| ||| ||||||||||||||||||||||||             |||||||| |||||||||||    
T  8248736 tatcttaattttttttagcgattattggatttgtttcaatcacttatacctcaaatttacttttatt-------------ctcacattacttctaaatac 8248650  T
Q  332 ttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaa 387  Q
    ||||||||||||||  ||||||| | ||||||||  ||| ||||||| | ||||||    
T  8248649 ttgcagctagaagatatttgttgctccaagtgaagctattaaagatgttattgcaa 8248594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 517
Target Start/End: Original strand, 26608204 - 26608275
Alignment:
Q  445 tttttggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttgatattcttgga 517  Q
    ||||||||| ||||| |||||||| |||||||| |  ||||||||||||||||||||||||||| | ||||||    
T  26608204 tttttggtgaaaaaa-tgattattactaggtttagttaggatatcttatttgtagtattttgatttgcttgga 26608275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 95 - 433
Target Start/End: Original strand, 37744339 - 37744676
Alignment:
Q  95 gcctgctagaattggttttactttcatggaatataacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgttt 194  Q
    ||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||  ||    
T  37744339 gcctggtaggattgattttactttcatggaatataacaatgtgagatccttcctctcttcagaaagtagcaacacttaaatcaattggattttgtttctt 37744438  T
Q  195 gcttcatctctagcagaggtaagttatgctctatctttatatctcaa-ttttttagtgaatgttggatttagttcattcatttatacctcaaatttactt 293  Q
    ||||||||| ||| | |||||| || ||| | |||||| |||||||| ||||||||||| |||||||||  ||||| |||||||||||||||||||||||    
T  37744439 gcttcatctttagtaaaggtaaattctgcaccatctttgtatctcaatttttttagtgattgttggattgggttcaatcatttatacctcaaatttactt 37744538  T
Q  294 ttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaag 393  Q
    ||||||||          ||||||||||||||||||||||||| |||||||||||||||||||||||| |||  |||||||||||||||||| | ||||     
T  37744539 ttattttg--tttttgttctcacattccttctaaatacttgcacctagaagacttttgttgtttcaagagaagctatgaaagatggtgttgcgatccaaa 37744636  T
Q  394 aatatttttgttgcattagcttgcttagattccttcatgg 433  Q
    || ||||||||||||||||||||||||||| || ||||||    
T  37744637 aagatttttgttgcattagcttgcttagatcccctcatgg 37744676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 163 - 495
Target Start/End: Original strand, 37750312 - 37750646
Alignment:
Q  163 gcaacacttaaatcaataggat----tttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttg 258  Q
    ||||||||||||| ||||||||    || |||  ||||||||||| ||  | |||||| || ||||| |||||||||||||||||||||||||| |||||    
T  37750312 gcaacacttaaattaataggatcgatttagttacttgcttcatctttactaaaggtaaattctgctccatctttatatctcaattttttagtgattgttg 37750411  T
Q  259 gatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttc 358  Q
    |||||  |||| | |||||||||||||||||||||||||||||          ||||||||||||||||||||||||| |||||||||||||||||||||    
T  37750412 gatttgattcaattatttatacctcaaatttacttttattttgtttttgtt--ctcacattccttctaaatacttgcaactagaagacttttgttgtttc 37750509  T
Q  359 aagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatggttatttattattttttggtggaaaa 458  Q
     || |||  |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  || |||||| || |  || ||||||| |||||||    
T  37750510 cagagaagctatgaaagatggtgttacaagccaagaagatttttgttgcattagcttgcttagaccccatcatggctaatgttttttttttgttggaaaa 37750609  T
Q  459 agtgattattgctaggtttggcgaggatatcttattt 495  Q
    | |||||||| |||||||| |  ||||||||||||||    
T  37750610 aatgattattactaggtttagttaggatatcttattt 37750646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 113 - 446
Target Start/End: Original strand, 24558302 - 24558639
Alignment:
Q  113 tactttcatggaatataacaatgtcaga-----tccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctag 207  Q
    |||||||| ||||||||||||| |||||     || | ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| || |||    
T  24558302 tactttcagggaatataacaatatcagaggaagtcatgcctctattcagaaagtagcaacacttaaattaataggattttgttgcttgcttcacctttag 24558401  T
Q  208 cagaggtaagttat--gctctatctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnn 305  Q
     | |||||| ||||  |||| |||||||||||||||| |||||| ||   |||||||| ||||| |||||||||||||||||||||||||||||||        
T  24558402 taaaggtaaattatatgctccatctttatatctcaatgttttagagatcattggatttggttcaatcatttatacctcaaatttacttttattttg--tt 24558499  T
Q  306 nnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgtt 405  Q
          |||||||||||||| ||||||| |||||| |||| |||||||| |||||||||  | |||||||||| ||||||||| |||||| ||| |||||    
T  24558500 tttgtactcacattccttct-aatacttacagctaaaagatttttgttgcttcaagtgagca-atgaaagatgatgttgcaagtcaagaagattcttgtt 24558597  T
Q  406 gcattagc-ttgcttagattccttcatggttatttattattt 446  Q
     || |||| ||||||||||||| |||||| || || ||||||    
T  24558598 tcaatagctttgcttagattccctcatggctagtttttattt 24558639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 21318442 - 21318401
Alignment:
Q  139 gatccttcctctgttcagaaagtagcaacacttaaatcaata 180  Q
    |||| |||||||||||||||| |||||||| |||||||||||    
T  21318442 gatcattcctctgttcagaaaatagcaacaattaaatcaata 21318401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 495
Target Start/End: Original strand, 37744702 - 37744751
Alignment:
Q  446 ttttggtggaaaaagtgattattgctaggtttggcgaggatatcttattt 495  Q
    ||||||||||||||||||||||| |||||||| |   |||||||||||||    
T  37744702 ttttggtggaaaaagtgattattactaggtttagttgggatatcttattt 37744751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 105 - 382
Target Start/End: Complemental strand, 6224163 - 6223888
Alignment:
Q  105 attggttttactttcatggaatataacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctc 204  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||     
T  6224163 attggttttactttcatggaatataacaatgtgggatctttcctctgttcaaaaagtagcaacacttaaatcaatatgattttgttgcttgcttcatctt 6224064  T
Q  205 tagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnn 304  Q
    ||| | |||||| || ||||| |||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||       
T  6224063 tagtaaaggtaaattctgctccatctttatatctcaattttttagtgattgttggatttggttcaatcatttatacctcaaatttacttttattttg--t 6223966  T
Q  305 nnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgt 382  Q
           | || |||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||||||||    
T  6223965 ttttgttcccatattccttctaaatacttgcagctagaagacttttgttgtttcgagagaagctatgaaagatggtgt 6223888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 232 - 433
Target Start/End: Original strand, 17633856 - 17634056
Alignment:
Q  232 tatatctcaatttttt-agtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaata 330  Q
    |||||||||||||||| ||||| | |||||||| ||||| |||||||||||| ||||||||||||| ||||          |||||||||||||||||||    
T  17633856 tatatctcaatttttttagtgattattggatttggttcaatcatttatacctaaaatttacttttactttgtttttgtt--ctcacattccttctaaata 17633953  T
Q  331 cttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttca 430  Q
    ||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||||||||| ||||||| |||  |||||||||||||| || |||    
T  17633954 cttgcagctagaagatttttgttgcttcaagtgaagttatgaaagatggtgttgcaagccaagaagatttttgctgcggtagcttgcttagatcccctca 17634053  T
Q  431 tgg 433  Q
    |||    
T  17634054 tgg 17634056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 14998189 - 14998069
Alignment:
Q  376 atggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatggtta--tttattattttttggtggaaaaagtgattattgctag 473  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||   |||||||| ||  |||||| || |||  ||||||||||||||||| ||||    
T  14998189 atggtgttgcaaaccaagaagatttttgttgcattagcttgcttagaagacttcatggctaattttatt-ttattttttggaaaaagtgattattactag 14998091  T
Q  474 gtttggcgaggatatcttattt 495  Q
    |||| |  ||||||||||||||    
T  14998090 gtttagttaggatatcttattt 14998069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 105 - 433
Target Start/End: Original strand, 24631517 - 24631841
Alignment:
Q  105 attggttttactttcatggaatataacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctc 204  Q
    ||||||||||||||||||||||| |  ||| ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||  |||||||||||     
T  24631517 attggttttactttcatggaatagagaaatatcagatccttcctcttttcagaaagttgcaacacttgaatcaataggattttgttccttgcttcatctt 24631616  T
Q  205 tagcagaggtaagttatgctctatctttatatctcaattttttagtga--atgttggatttagttcattcatttatacctcaaatttacttttattttgn 302  Q
    ||| | |||||| || ||||| ||||||||||||||  ||||||||||   |||||||||| ||||| |||||||||||||||||||||||||| ||||     
T  24631617 tagtaaaggtaaattctgctccatctttatatctcagatttttagtgattgtgttggatttggttcaatcatttatacctcaaatttacttttaatttg- 24631715  T
Q  303 nnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatattttt 402  Q
             |||||||||||  ||||||||||||||||||||||||||||||  |||||||||  || |||| ||||||||||||| |||||| ||||||    
T  24631716 ---tttgtcctcacattcct--taaatacttgcagctagaagacttttgttgcctcaagtgaagctacgaaacatggtgttgcaagtcaagaagattttt 24631810  T
Q  403 gttgcattagcttgcttagattccttcatgg 433  Q
    ||||||||||||||||||||| || ||||||    
T  24631811 gttgcattagcttgcttagatcccctcatgg 24631841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 136 - 387
Target Start/End: Complemental strand, 1943378 - 1943129
Alignment:
Q  136 tcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttata 235  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||  |||||||| ||| ||      ||| | |||||| || ||||| |||||||||    
T  1943378 tcagatccttactctgtttagaaagtagtaacacttaaatcaatagacttttgttgcttgtttt-----tagaaaaggtaaattctgctccatctttata 1943284  T
Q  236 tctcaatttttta--gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatactt 333  Q
    ||||||||||||   |||| | |  ||||| ||||| ||| |||||||||||||||||||||||||||          ||||||||||||||||||||||    
T  1943283 tctcaatttttttttgtgattatcagatttggttcaatcacttatacctcaaatttacttttattttg--tttgtgttctcacattccttctaaatactt 1943186  T
Q  334 gcagctagaagacttttgttgtttcaagtgaaaatatga---aagatggtgttgcaa 387  Q
    || |||||||||  ||||||| | ||||||||| ||| |   |||||||||||||||    
T  1943185 gcggctagaagatatttgttgctccaagtgaaactattaattaagatggtgttgcaa 1943129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 30129181 - 30129257
Alignment:
Q  312 ctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagc 389  Q
    |||||||||||||||||||||||||||||||||| |||||||  || | |||||  ||| ||||||||||||||||||    
T  30129181 ctcacattccttctaaatacttgcagctagaaga-ttttgttactttaggtgaagctattaaagatggtgttgcaagc 30129257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 144 - 495
Target Start/End: Original strand, 27150555 - 27150894
Alignment:
Q  144 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatt 243  Q
    |||||||||||||||| || |||||||||||||||||||||||||||| ||| ||||||| ||| | |||||| || ||||| |||||||||||||||||    
T  27150555 ttcctctgttcagaaattaacaacacttaaatcaataggattttgttgcttggttcatctttagtaaaggtaaattttgctccatctttatatctcaatt 27150654  T
Q  244 ttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaa 343  Q
    ||||||||| |||||||||| ||| | | |||||||||||||||||||||||||||||          |||||||| ||| |||||||||||||||||||    
T  27150655 ttttagtgattgttggatttggttaaattatttatacctcaaatttacttttattttg--tttttgttctcacatttcttttaaatacttgcagctagaa 27150752  T
Q  344 gacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatggttatttatta 443  Q
    ||||||||||||||| || |||  |||||||           |||||||||| || |||||||||||| ||||||||||| || |||||| || || |||    
T  27150753 gacttttgttgtttccagagaagctatgaaa-----------aagccaagaagatatttgttgcattatcttgcttagatcccctcatggctaattttta 27150841  T
Q  444 tttt-ttggtggaaaaagtgattattgctaggtttggcgaggatatcttattt 495  Q
    |||| ||||||||||||||||||||| ||||||||    ||||||||||||||    
T  27150842 ttttgttggtggaaaaagtgattattactaggtttatttaggatatcttattt 27150894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 143 - 433
Target Start/End: Complemental strand, 7703235 - 7702953
Alignment:
Q  143 cttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaat 242  Q
    |||| ||| |||||||||||| |||| ||||||||||||||||||| |   |||||||||| ||| | |||||| || ||||| || |||||||||||||    
T  7703235 cttcttctcttcagaaagtagaaacatttaaatcaataggattttgct---tgcttcatctttagtaaaggtaaattctgctccatttttatatctcaat 7703139  T
Q  243 tttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctaga 342  Q
    ||| |||||| |||||||||| ||||| | |||||||||||||||||||||||||||||          ||||| |||||||||||||||||||||||||    
T  7703138 tttctagtgattgttggatttggttcaattatttatacctcaaatttacttttattttg--tttttgttctcacgttccttctaaatacttgcagctaga 7703041  T
Q  343 agacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatgg 433  Q
    |||||||||||||||| || |||  ||||||||||||| |||||| | |||   |||||||||||||||||||| ||||||||| ||||||    
T  7703040 agacttttgttgtttccagagaagctatgaaagatggttttgcaaacaaag---atttttgttgcattagcttggttagattccctcatgg 7702953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 129 - 423
Target Start/End: Complemental strand, 24479965 - 24479673
Alignment:
Q  129 aacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctat 228  Q
    |||||| ||||||||||||||| |||||||||||||||||  |||||||||| ||||  |||| ||||||||||| |||   || ||| || | ||  ||    
T  24479965 aacaatatcagatccttcctctattcagaaagtagcaacatataaatcaatatgattaagttgcttgcttcatctttagttaagctaaattctactacat 24479866  T
Q  229 ctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaa 328  Q
    |||||||||||||||||||||||| | ||||||||  |||| |||||||||||||||||||||||||| |||            ||| ||||| ||||||    
T  24479865 ctttatatctcaattttttagtgattattggatttgattcaatcatttatacctcaaatttacttttactttatttttgtta--tcatattccatctaaa 24479768  T
Q  329 tacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagat 423  Q
    |||||| ||||||||||||||||||| ||||||||||  ||| |||||||||||||||| | ||||| || ||||||||||||||||||||||||    
T  24479767 tacttgtagctagaagacttttgttgcttcaagtgaagctataaaagatggtgttgcaatctaagaagatctttgttgcattagcttgcttagat 24479673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 312 - 387
Target Start/End: Complemental strand, 31481392 - 31481317
Alignment:
Q  312 ctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaa 387  Q
    ||||||||||||||||||||||| || ||||||| |||| ||| || |||||||  ||  ||||||||||||||||    
T  31481392 ctcacattccttctaaatacttgtagttagaagaatttttttgcttaaagtgaagctaataaagatggtgttgcaa 31481317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 40017022 - 40016936
Alignment:
Q  211 aggtaagttatgctctatctttatatctcaatttttt--agtgaatgttggatttagttcattcatttatacctcaaatttactttt 295  Q
    |||||| || || |||||||||| |||||||||||||  ||| | | ||| |||| ||||| ||||||||||||| |||||||||||    
T  40017022 aggtaaattttgttctatctttacatctcaattttttttagttattattgaatttggttcaatcatttatacctctaatttactttt 40016936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 9e-65; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 144 - 423
Target Start/End: Original strand, 39367443 - 39367720
Alignment:
Q  144 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| | ||| || || ||||| ||| |||||||||| |     
T  39367443 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttggctgcttcatctttagtaaaggaaaattctgctccatc-ttatatctcatta 39367541  T
Q  244 ttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaa 343  Q
    ||| ||||| |||||||||| || || | |||||||||||||||||||||||||||||          ||||||||||||||||||||||| ||||||||    
T  39367542 tttcagtgattgttggatttggtacaattatttatacctcaaatttacttttattttg--tttttgttctcacattccttctaaatacttgtagctagaa 39367639  T
Q  344 gacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagc-ttgcttagat 423  Q
    ||||||||||||||| |  |||  ||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  39367640 gacttttgttgtttccaaggaagctatgaaaaatggtgttgcaagccaagcagatttttgttgcattagctttgcttagat 39367720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 160 - 423
Target Start/End: Complemental strand, 18308975 - 18308714
Alignment:
Q  160 gtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttgg 259  Q
    |||| |||||||  ||||||| ||||||| || ||||||||||||||| | |||||| || ||||| |||||||||||||||||| ||||||| ||||||    
T  18308975 gtagaaacacttttatcaatatgattttgctgcttgcttcatctctagtaaaggtaaattctgctccatctttatatctcaatttcttagtgattgttgg 18308876  T
Q  260 atttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttca 359  Q
    |||| ||||| | |||||||||||||||||| |||||||| |          ||||||||| |||||||||||||||||||||||||||||||||| ||     
T  18308875 atttggttcaataatttatacctcaaatttatttttatttagtttttgat--ctcacattcattctaaatacttgcagctagaagacttttgttgtatcc 18308778  T
Q  360 agtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagat 423  Q
    || |||  |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  18308777 agagaagctatgaaggatggtgttgcaagccaagaagatttctgttgcattagcttgcttagat 18308714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 316 - 423
Target Start/End: Complemental strand, 17113554 - 17113447
Alignment:
Q  316 cattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagctt 415  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||| ||||  |||||| |||| ||||||||||||| || |||||||||||||||||||    
T  17113554 cattccttttaaatacttgcagctagaagatttttgttgattcaaatgaagctatgaatgatgttgttgcaagccaataagatttttgttgcattagctt 17113455  T
Q  416 gcttagat 423  Q
    ||||||||    
T  17113454 gcttagat 17113447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 495
Target Start/End: Original strand, 39367757 - 39367807
Alignment:
Q  445 tttttggtggaaaaagtgattattgctaggtttggcgaggatatcttattt 495  Q
    ||||||||||||||||||||| || |||||||| |  ||||||||||||||    
T  39367757 tttttggtggaaaaagtgattgttactaggtttagttaggatatcttattt 39367807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 118 - 301
Target Start/End: Complemental strand, 31571702 - 31571518
Alignment:
Q  118 tcatggaatataacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaag 217  Q
    ||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||    
T  31571702 tcatggaatataacattgtgagatccttcctctgttcagaaagtggcaacacttaaatcaataggattttgttgtttgattcatctttagtaaaggtaag 31571603  T
Q  218 ttatgctctatctttatatctcaattttttagtgaatgttggatttagttcattcatttata-cctcaaatttacttttattttg 301  Q
    || | ||  |||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||||||    
T  31571602 ttcttctgcatctttatatctcaattttttagtgattgttggatttagttcaatcatttatacccccaaatttacttttattttg 31571518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 87 - 359
Target Start/End: Original strand, 25338393 - 25338663
Alignment:
Q  87 tgcttacagcctgctagaattggttttactttcatggaatataacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaataggattt 186  Q
    ||||||| | ||| ||||||| |||||||||||||||||||||||||| |   ||| |||||||||| ||||||||||||||||||||||||||||||||    
T  25338393 tgcttacggtctggtagaattcgttttactttcatggaatataacaatattgaatctttcctctgtttagaaagtagcaacacttaaatcaataggattt 25338492  T
Q  187 tgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaa 286  Q
    ||||| ||||||||||| ||| | |||||| || | ||| ||||||||||||||| ||||| |||| | |||||||| ||||| ||||||||||||  ||    
T  25338493 tgttgcttgcttcatctttagtaaaggtaaattctactccatctttatatctcaaattttttgtgattattggatttggttcaatcatttatacctacaa 25338592  T
Q  287 tttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttca 359  Q
    |||||||||| ||||          |||||||| ||| ||||||||||||||||||||| |||||||| ||||    
T  25338593 tttacttttactttg--tttttgttctcacatttcttttaaatacttgcagctagaagatttttgttgcttca 25338663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 11050946 - 11051002
Alignment:
Q  122 ggaatataacaatgtcagatccttcctctgttcagaaagtagcaacacttaaatcaa 178  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||||| |||||    
T  11050946 ggaatataacaatagcagatccttcttctgttcagaaagtagcaacacttagatcaa 11051002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 126 - 365
Target Start/End: Original strand, 445564 - 445801
Alignment:
Q  126 tataacaatgtcagatccttcctctgttcagaaag-tagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgct 224  Q
    ||||||||| ||| |||||||||||| |||||||  | |||||||||||||||||| ||||||||||||||||| |||| ||| | | |||| || ||||    
T  445564 tataacaatatcatatccttcctctgctcagaaaaatggcaacacttaaatcaataagattttgttgtttgctttatctttagtaaaagtaaattttgct 445663  T
Q  225 ctatctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttc 324  Q
    | || ||||||| |||||||||| || ||| |||||||| |||||   |||||||||||||||||||||||||||||          || ||||||||||    
T  445664 ccat-tttatatttcaattttttggtaaatattggatttggttcaaatatttatacctcaaatttacttttattttg--tttttgtgcttacattccttc 445760  T
Q  325 taaatacttgcagctagaagacttttgttgtttcaagtgaa 365  Q
    ||||||||||||||||||||| | |||||| ||||||||||    
T  445761 taaatacttgcagctagaagattgttgttgcttcaagtgaa 445801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 445854 - 445906
Alignment:
Q  397 atttttgttgcattagcttgcttagattccttcatggttatttattatttttt 449  Q
    |||||| |||||||||||||||||||| || |||||| ||||| || ||||||    
T  445854 attttttttgcattagcttgcttagatcccatcatggctatttcttttttttt 445906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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