View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20401_low_3 (Length: 442)
Name: NF20401_low_3
Description: NF20401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20401_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 148 - 421
Target Start/End: Original strand, 35554795 - 35555068
Alignment:
| Q |
148 |
aactaacataactgaaaagttctaactgatcaataaatgttaacaatttgaaaattctgtaagttcttcaagaccttttgtaacaatgaaaatggtaaga |
247 |
Q |
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| T |
35554795 |
aactaacataactgaaaagttctaactgatcaataaatgttaacaatttgaaaattctgtaagttcttcaagaccttttgtaacaatgaaaatggtaaga |
35554894 |
T |
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| Q |
248 |
gaccctgctttgcaggtcaaacgcaaaatctatttttcatgggaaagtagttgtcattgttctgatcaaacagaaacaaagtaaaattcattgttgtcaa |
347 |
Q |
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| T |
35554895 |
gaccctgctttgcaggtcaaacgcaaaatctatttttcatgggaaagtagttgtcattgttctgatcaaacagaaacaaagtaaaattcattgttgtcaa |
35554994 |
T |
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| Q |
348 |
ctacgcaaatgtgtatgcttggaaaacattaaggatagcatagcatagcgtttatcatataaatgtttatgtat |
421 |
Q |
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| T |
35554995 |
ctacgcaaatgcgtatgcttggaaaacattaaggatagtatagcatagcgtttatcatataaatgtttatgtat |
35555068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 35552508 - 35552643
Alignment:
| Q |
14 |
aaatacatatgaggaagcgatgtgtaatgaaaattggagattagctatgaaatttgagttaactgctttgatgaagaataacacagagagagtgacacag |
113 |
Q |
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| T |
35552508 |
aaatacatatgaggaagcgatgtgtaatgaaaattggagattagctatgaaatttgagttaactgctttgatgaagaataacacatagagagtgacacag |
35552607 |
T |
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| Q |
114 |
cttccccctcataaaagagcaagtgggtttttaaaa |
149 |
Q |
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| T |
35552608 |
cttccccctcataaaagagcaagtgggtttttaaaa |
35552643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 35889472 - 35889405
Alignment:
| Q |
148 |
aactaacataactgaaaagttctaactgatcaataaatgttaacaatttgaaaattctgtaagttctt |
215 |
Q |
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||||| |||||||||||||||| ||| |||||||| ||||||| |||| |||||||| ||||||||| |
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| T |
35889472 |
aactaccataactgaaaagttccaacaaatcaataactgttaaccatttcaaaattctttaagttctt |
35889405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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